queso-0.56.1
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This class provides options for each level of the Multilevel sequence generator if no input file is available. More...
#include <MLSamplingLevelOptions.h>
Public Member Functions | |
Constructor/Destructor methods | |
MLSamplingLevelOptions (const BaseEnvironment &env, const char *prefix) | |
Constructor: reads options from the input file. More... | |
virtual | ~MLSamplingLevelOptions () |
Destructor. More... | |
Misc method | |
const BaseEnvironment & | env () const |
Access to the environment. More... | |
I/O methods | |
void | scanOptionsValues (const MLSamplingLevelOptions *defaultOptions) |
void | print (std::ostream &os) const |
Public Attributes | |
std::string | m_prefix |
std::string | m_help |
If non-empty string, print options and values to output file. More... | |
std::string | m_checkpointOutputFileName |
Name of checkpoint output file. More... | |
bool | m_stopAtEnd |
Stop at end of such level. More... | |
std::string | m_dataOutputFileName |
Name of generic output file. More... | |
bool | m_dataOutputAllowAll |
subEnvs that will write to generic output file. More... | |
std::set< unsigned int > | m_dataOutputAllowedSet |
subEnvs that will write to generic output file. More... | |
std::string | m_str1 |
subEnvs that will write to generic output file. More... | |
unsigned int | m_loadBalanceAlgorithmId |
Perform load balancing with chosen algorithm (0 = no balancing). More... | |
double | m_loadBalanceTreshold |
Perform load balancing if load unbalancing ratio > threshold. More... | |
double | m_minEffectiveSizeRatio |
Minimum allowed effective size ratio wrt previous level. More... | |
double | m_maxEffectiveSizeRatio |
Maximum allowed effective size ratio wrt previous level. More... | |
bool | m_scaleCovMatrix |
Whether or not scale proposal covariance matrix. More... | |
double | m_minRejectionRate |
minimum allowed attempted rejection rate at current level More... | |
double | m_maxRejectionRate |
maximum allowed attempted rejection rate at current level. More... | |
double | m_covRejectionRate |
c.o.v. for judging attempted rejection rate at current level. More... | |
double | m_minAcceptableEta |
minimum acceptable eta, More... | |
bool | m_totallyMute |
Whether or not to be totally mute (no printout message). More... | |
std::string | m_initialPositionDataInputFileName |
Name of input file for initial position. More... | |
std::string | m_initialPositionDataInputFileType |
Type of input file for initial position. More... | |
std::string | m_initialProposalCovMatrixDataInputFileName |
Name of input file for initial proposal covariance matrix. More... | |
std::string | m_initialProposalCovMatrixDataInputFileType |
Type of input file for initial proposal covariance matrix. More... | |
bool | m_initialPositionUsePreviousLevelLikelihood |
Use previous level likelihood for initial chain position instead of re-computing it from target pdf. More... | |
std::set< unsigned int > | m_parameterDisabledSet |
std::string | m_str2 |
std::vector< double > | m_initialValuesOfDisabledParameters |
std::string | m_str3 |
std::string | m_rawChainDataInputFileName |
Name of input file for raw chain. More... | |
std::string | m_rawChainDataInputFileType |
Type of input file for raw chain. More... | |
unsigned int | m_rawChainSize |
Size of raw chain. More... | |
bool | m_rawChainGenerateExtra |
Generate extra information about raw chain. More... | |
unsigned int | m_rawChainDisplayPeriod |
Period of message display during raw chain generation. More... | |
bool | m_rawChainMeasureRunTimes |
Whether or not to measure run times. More... | |
unsigned int | m_rawChainDataOutputPeriod |
Period of message display during raw chain generation. More... | |
std::string | m_rawChainDataOutputFileName |
Name of output file for raw chain. More... | |
std::string | m_rawChainDataOutputFileType |
Type of output file for raw chain. More... | |
bool | m_rawChainDataOutputAllowAll |
Whether or not subEnvs will write to output file for raw chain. More... | |
std::set< unsigned int > | m_rawChainDataOutputAllowedSet |
subEnvs that will write to output file for raw chain. More... | |
std::string | m_str4 |
bool | m_filteredChainGenerate |
Whether or not to generate filtered chain. More... | |
double | m_filteredChainDiscardedPortion |
Initial discarded portion for chain filtering. More... | |
unsigned int | m_filteredChainLag |
Spacing for chain filtering. More... | |
std::string | m_filteredChainDataOutputFileName |
Name of output file for filtered chain. More... | |
std::string | m_filteredChainDataOutputFileType |
Type of output file for filtered chain. More... | |
bool | m_filteredChainDataOutputAllowAll |
Whether or not subEnvs will write to output file for filtered chain. More... | |
std::set< unsigned int > | m_filteredChainDataOutputAllowedSet |
subEnvs that will write to output file for filtered chain. More... | |
std::string | m_str5 |
bool | m_displayCandidates |
Display candidates generated in the core MH algorithm. More... | |
bool | m_putOutOfBoundsInChain |
Put 'out of bound' candidates in chain as well. More... | |
bool | m_tkUseLocalHessian |
Whether or not 'proposal' uses local Hessian. More... | |
bool | m_tkUseNewtonComponent |
Whether or not 'proposal' uses Newton component. More... | |
unsigned int | m_drMaxNumExtraStages |
'dr' maximum number of extra stages. More... | |
std::vector< double > | m_drScalesForExtraStages |
'dr' list of scales for proposal covariance matrices from 2nd stage on. More... | |
std::string | m_str6 |
bool | m_drDuringAmNonAdaptiveInt |
Whether or not 'dr' is used during 'am' non adaptive interval. More... | |
bool | m_amKeepInitialMatrix |
Whether or not 'am' will keep initial (given) matrix. More... | |
unsigned int | m_amInitialNonAdaptInterval |
'am' initial non adaptation interval More... | |
unsigned int | m_amAdaptInterval |
'am' adaptation interval. More... | |
unsigned int | m_amAdaptedMatricesDataOutputPeriod |
Period for outputing 'am' adapted matrices. More... | |
std::string | m_amAdaptedMatricesDataOutputFileName |
Name of output file for 'am' adapted matrices. More... | |
std::string | m_amAdaptedMatricesDataOutputFileType |
Type of output file for 'am' adapted matrices. More... | |
bool | m_amAdaptedMatricesDataOutputAllowAll |
Whether or not subEnvs will write to output file for 'am' adapted matrices. More... | |
std::set< unsigned int > | m_amAdaptedMatricesDataOutputAllowedSet |
subEnvs that will write to output file for 'am' adapted matrices. More... | |
std::string | m_str7 |
double | m_amEta |
'am' eta. More... | |
double | m_amEpsilon |
'am' epsilon. More... | |
bool | m_doLogitTransform |
Whether or not a logit transform will be done for bounded domains. More... | |
std::string | m_algorithm |
Which algorithm to use for sampling. More... | |
std::string | m_tk |
Which transition kernel to use for sampling. More... | |
Private Member Functions | |
void | copyOptionsValues (const MLSamplingLevelOptions &srcOptions) |
Copies the option values from srcOptions to this . More... | |
void | getAllOptions () |
void | defineAllOptions () |
void | checkOptions (const BaseEnvironment *env) |
Friends | |
std::ostream & | operator<< (std::ostream &os, const MLSamplingLevelOptions &obj) |
This class provides options for each level of the Multilevel sequence generator if no input file is available.
Multilevel sequence generator expects options for its methods to operate in each level of the sequece generated. This class provides default values for such options if no input file is available.
Definition at line 119 of file MLSamplingLevelOptions.h.
QUESO::MLSamplingLevelOptions::MLSamplingLevelOptions | ( | const BaseEnvironment & | env, |
const char * | prefix | ||
) |
Constructor: reads options from the input file.
Definition at line 30 of file MLSamplingLevelOptions.C.
References checkOptions(), defineAllOptions(), getAllOptions(), m_parser, and QUESO::BoostInputOptionsParser::scanInputFile().
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Definition at line 618 of file MLSamplingLevelOptions.C.
References m_amAdaptedMatricesDataOutputAllowAll, m_amAdaptedMatricesDataOutputAllowedSet, m_covRejectionRate, m_dataOutputAllowAll, m_dataOutputAllowedSet, m_drMaxNumExtraStages, m_drScalesForExtraStages, m_env, m_filteredChainDataOutputAllowAll, m_filteredChainDataOutputAllowedSet, m_filteredChainGenerate, m_filteredChainLag, m_help, m_initialValuesOfDisabledParameters, m_maxEffectiveSizeRatio, m_maxRejectionRate, m_minEffectiveSizeRatio, m_minRejectionRate, m_option_covRejectionRate, m_option_filteredChain_lag, m_option_maxEffectiveSizeRatio, m_option_maxRejectionRate, m_option_minEffectiveSizeRatio, m_option_minRejectionRate, m_parameterDisabledSet, m_rawChainDataOutputAllowAll, m_rawChainDataOutputAllowedSet, m_str1, m_str2, m_str3, m_str4, m_str5, m_str6, m_str7, queso_require_greater_equal_msg, queso_require_less_msg, scale, QUESO::BaseEnvironment::subDisplayFile(), and QUESO::BaseEnvironment::subId().
Referenced by MLSamplingLevelOptions().
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Copies the option values from srcOptions
to this
.
Definition at line 484 of file MLSamplingLevelOptions.C.
References m_algorithm, m_amAdaptedMatricesDataOutputAllowAll, m_amAdaptedMatricesDataOutputAllowedSet, m_amAdaptedMatricesDataOutputFileName, m_amAdaptedMatricesDataOutputFileType, m_amAdaptedMatricesDataOutputPeriod, m_amAdaptInterval, m_amEpsilon, m_amEta, m_amInitialNonAdaptInterval, m_amKeepInitialMatrix, m_checkpointOutputFileName, m_covRejectionRate, m_dataOutputAllowAll, m_dataOutputAllowedSet, m_dataOutputFileName, m_displayCandidates, m_doLogitTransform, m_drDuringAmNonAdaptiveInt, m_drMaxNumExtraStages, m_drScalesForExtraStages, m_filteredChainDataOutputAllowAll, m_filteredChainDataOutputAllowedSet, m_filteredChainDataOutputFileName, m_filteredChainDataOutputFileType, m_filteredChainDiscardedPortion, m_filteredChainGenerate, m_filteredChainLag, m_initialPositionDataInputFileName, m_initialPositionDataInputFileType, m_initialPositionUsePreviousLevelLikelihood, m_initialProposalCovMatrixDataInputFileName, m_initialProposalCovMatrixDataInputFileType, m_initialValuesOfDisabledParameters, m_loadBalanceAlgorithmId, m_loadBalanceTreshold, m_maxEffectiveSizeRatio, m_maxRejectionRate, m_minAcceptableEta, m_minEffectiveSizeRatio, m_minRejectionRate, m_parameterDisabledSet, m_putOutOfBoundsInChain, m_rawChainDataInputFileName, m_rawChainDataInputFileType, m_rawChainDataOutputAllowAll, m_rawChainDataOutputAllowedSet, m_rawChainDataOutputFileName, m_rawChainDataOutputFileType, m_rawChainDataOutputPeriod, m_rawChainDisplayPeriod, m_rawChainGenerateExtra, m_rawChainMeasureRunTimes, m_rawChainSize, m_scaleCovMatrix, m_stopAtEnd, m_str1, m_str2, m_str3, m_str4, m_str5, m_str6, m_str7, m_tk, m_tkUseLocalHessian, m_tkUseNewtonComponent, and m_totallyMute.
Referenced by scanOptionsValues().
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Definition at line 198 of file MLSamplingLevelOptions.C.
References m_amAdaptedMatricesDataOutputAllowAll, m_amAdaptedMatricesDataOutputFileName, m_amAdaptedMatricesDataOutputFileType, m_amAdaptedMatricesDataOutputPeriod, m_amAdaptInterval, m_amEpsilon, m_amEta, m_amInitialNonAdaptInterval, m_amKeepInitialMatrix, m_checkpointOutputFileName, m_covRejectionRate, m_dataOutputAllowAll, m_dataOutputFileName, m_displayCandidates, m_drDuringAmNonAdaptiveInt, m_drMaxNumExtraStages, m_filteredChainDataOutputAllowAll, m_filteredChainDataOutputFileName, m_filteredChainDataOutputFileType, m_filteredChainDiscardedPortion, m_filteredChainGenerate, m_filteredChainLag, m_initialPositionDataInputFileName, m_initialPositionDataInputFileType, m_initialPositionUsePreviousLevelLikelihood, m_initialProposalCovMatrixDataInputFileName, m_initialProposalCovMatrixDataInputFileType, m_loadBalanceAlgorithmId, m_loadBalanceTreshold, m_maxEffectiveSizeRatio, m_maxRejectionRate, m_minAcceptableEta, m_minEffectiveSizeRatio, m_minRejectionRate, m_option_algorithm, m_option_am_adaptedMatrices_dataOutputAllowAll, m_option_am_adaptedMatrices_dataOutputAllowedSet, m_option_am_adaptedMatrices_dataOutputFileName, m_option_am_adaptedMatrices_dataOutputFileType, m_option_am_adaptedMatrices_dataOutputPeriod, m_option_am_adaptInterval, m_option_am_epsilon, m_option_am_eta, m_option_am_initialNonAdaptInterval, m_option_am_keepInitialMatrix, m_option_checkpointOutputFileName, m_option_covRejectionRate, m_option_dataOutputAllowAll, m_option_dataOutputAllowedSet, m_option_dataOutputFileName, m_option_displayCandidates, m_option_doLogitTransform, m_option_dr_duringAmNonAdaptiveInt, m_option_dr_listOfScalesForExtraStages, m_option_dr_maxNumExtraStages, m_option_filteredChain_dataOutputAllowAll, m_option_filteredChain_dataOutputAllowedSet, m_option_filteredChain_dataOutputFileName, m_option_filteredChain_dataOutputFileType, m_option_filteredChain_discardedPortion, m_option_filteredChain_generate, m_option_filteredChain_lag, m_option_help, m_option_initialPosition_dataInputFileName, m_option_initialPosition_dataInputFileType, m_option_initialPositionUsePreviousLevelLikelihood, m_option_initialProposalCovMatrix_dataInputFileName, m_option_initialProposalCovMatrix_dataInputFileType, m_option_initialValuesOfDisabledParameters, m_option_listOfDisabledParameters, m_option_loadBalanceAlgorithmId, m_option_loadBalanceTreshold, m_option_maxEffectiveSizeRatio, m_option_maxRejectionRate, m_option_minAcceptableEta, m_option_minEffectiveSizeRatio, m_option_minRejectionRate, m_option_putOutOfBoundsInChain, m_option_rawChain_dataInputFileName, m_option_rawChain_dataInputFileType, m_option_rawChain_dataOutputAllowAll, m_option_rawChain_dataOutputAllowedSet, m_option_rawChain_dataOutputFileName, m_option_rawChain_dataOutputFileType, m_option_rawChain_dataOutputPeriod, m_option_rawChain_displayPeriod, m_option_rawChain_generateExtra, m_option_rawChain_measureRunTimes, m_option_rawChain_size, m_option_scaleCovMatrix, m_option_stopAtEnd, m_option_tk, m_option_tk_useLocalHessian, m_option_tk_useNewtonComponent, m_option_totallyMute, m_parser, m_putOutOfBoundsInChain, m_rawChainDataInputFileName, m_rawChainDataInputFileType, m_rawChainDataOutputAllowAll, m_rawChainDataOutputFileName, m_rawChainDataOutputFileType, m_rawChainDataOutputPeriod, m_rawChainDisplayPeriod, m_rawChainGenerateExtra, m_rawChainMeasureRunTimes, m_rawChainSize, m_scaleCovMatrix, m_stopAtEnd, m_str1, m_str2, m_str3, m_str4, m_str5, m_str6, m_str7, m_tkUseLocalHessian, m_tkUseNewtonComponent, m_totallyMute, QUESO::BoostInputOptionsParser::registerOption(), UQ_ML_SAMPLING_L_ALGORITHM, UQ_ML_SAMPLING_L_DO_LOGIT_TRANSFORM, UQ_ML_SAMPLING_L_HELP, and UQ_ML_SAMPLING_L_TK.
Referenced by MLSamplingLevelOptions(), and scanOptionsValues().
const BaseEnvironment & QUESO::MLSamplingLevelOptions::env | ( | ) | const |
Access to the environment.
Definition at line 830 of file MLSamplingLevelOptions.C.
References m_env.
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Definition at line 275 of file MLSamplingLevelOptions.C.
References QUESO::BoostInputOptionsParser::getOption(), QUESO::BaseEnvironment::input(), m_algorithm, m_amAdaptedMatricesDataOutputAllowAll, m_amAdaptedMatricesDataOutputAllowedSet, m_amAdaptedMatricesDataOutputFileName, m_amAdaptedMatricesDataOutputFileType, m_amAdaptedMatricesDataOutputPeriod, m_amAdaptInterval, m_amEpsilon, m_amEta, m_amInitialNonAdaptInterval, m_amKeepInitialMatrix, m_checkpointOutputFileName, m_covRejectionRate, m_dataOutputAllowAll, m_dataOutputAllowedSet, m_dataOutputFileName, m_displayCandidates, m_doLogitTransform, m_drDuringAmNonAdaptiveInt, m_drMaxNumExtraStages, m_drScalesForExtraStages, m_env, m_filteredChainDataOutputAllowAll, m_filteredChainDataOutputAllowedSet, m_filteredChainDataOutputFileName, m_filteredChainDataOutputFileType, m_filteredChainDiscardedPortion, m_filteredChainGenerate, m_filteredChainLag, m_help, m_initialPositionDataInputFileName, m_initialPositionDataInputFileType, m_initialPositionUsePreviousLevelLikelihood, m_initialProposalCovMatrixDataInputFileName, m_initialProposalCovMatrixDataInputFileType, m_initialValuesOfDisabledParameters, m_loadBalanceAlgorithmId, m_loadBalanceTreshold, m_maxEffectiveSizeRatio, m_maxRejectionRate, m_minAcceptableEta, m_minEffectiveSizeRatio, m_minRejectionRate, m_option_algorithm, m_option_am_adaptedMatrices_dataOutputAllowAll, m_option_am_adaptedMatrices_dataOutputAllowedSet, m_option_am_adaptedMatrices_dataOutputFileName, m_option_am_adaptedMatrices_dataOutputFileType, m_option_am_adaptedMatrices_dataOutputPeriod, m_option_am_adaptInterval, m_option_am_epsilon, m_option_am_eta, m_option_am_initialNonAdaptInterval, m_option_am_keepInitialMatrix, m_option_checkpointOutputFileName, m_option_covRejectionRate, m_option_dataOutputAllowAll, m_option_dataOutputAllowedSet, m_option_dataOutputFileName, m_option_displayCandidates, m_option_doLogitTransform, m_option_dr_duringAmNonAdaptiveInt, m_option_dr_listOfScalesForExtraStages, m_option_dr_maxNumExtraStages, m_option_filteredChain_dataOutputAllowAll, m_option_filteredChain_dataOutputAllowedSet, m_option_filteredChain_dataOutputFileName, m_option_filteredChain_dataOutputFileType, m_option_filteredChain_discardedPortion, m_option_filteredChain_generate, m_option_filteredChain_lag, m_option_help, m_option_initialPosition_dataInputFileName, m_option_initialPosition_dataInputFileType, m_option_initialPositionUsePreviousLevelLikelihood, m_option_initialProposalCovMatrix_dataInputFileName, m_option_initialProposalCovMatrix_dataInputFileType, m_option_initialValuesOfDisabledParameters, m_option_listOfDisabledParameters, m_option_loadBalanceAlgorithmId, m_option_loadBalanceTreshold, m_option_maxEffectiveSizeRatio, m_option_maxRejectionRate, m_option_minAcceptableEta, m_option_minEffectiveSizeRatio, m_option_minRejectionRate, m_option_putOutOfBoundsInChain, m_option_rawChain_dataInputFileName, m_option_rawChain_dataInputFileType, m_option_rawChain_dataOutputAllowAll, m_option_rawChain_dataOutputAllowedSet, m_option_rawChain_dataOutputFileName, m_option_rawChain_dataOutputFileType, m_option_rawChain_dataOutputPeriod, m_option_rawChain_displayPeriod, m_option_rawChain_generateExtra, m_option_rawChain_measureRunTimes, m_option_rawChain_size, m_option_scaleCovMatrix, m_option_stopAtEnd, m_option_tk, m_option_tk_useLocalHessian, m_option_tk_useNewtonComponent, m_option_totallyMute, m_parameterDisabledSet, m_parser, m_putOutOfBoundsInChain, m_rawChainDataInputFileName, m_rawChainDataInputFileType, m_rawChainDataOutputAllowAll, m_rawChainDataOutputAllowedSet, m_rawChainDataOutputFileName, m_rawChainDataOutputFileType, m_rawChainDataOutputPeriod, m_rawChainDisplayPeriod, m_rawChainGenerateExtra, m_rawChainMeasureRunTimes, m_rawChainSize, m_scaleCovMatrix, m_stopAtEnd, m_tk, m_tkUseLocalHessian, m_tkUseNewtonComponent, m_totallyMute, UQ_ML_SAMPLING_L_ALGORITHM, UQ_ML_SAMPLING_L_DO_LOGIT_TRANSFORM, UQ_ML_SAMPLING_L_HELP, UQ_ML_SAMPLING_L_TK, and GetPot::vector_variable_size().
Referenced by MLSamplingLevelOptions(), and scanOptionsValues().
void QUESO::MLSamplingLevelOptions::print | ( | std::ostream & | os | ) | const |
Definition at line 729 of file MLSamplingLevelOptions.C.
References m_algorithm, m_amAdaptedMatricesDataOutputAllowAll, m_amAdaptedMatricesDataOutputAllowedSet, m_amAdaptedMatricesDataOutputFileName, m_amAdaptedMatricesDataOutputFileType, m_amAdaptedMatricesDataOutputPeriod, m_amAdaptInterval, m_amEpsilon, m_amEta, m_amInitialNonAdaptInterval, m_amKeepInitialMatrix, m_checkpointOutputFileName, m_covRejectionRate, m_dataOutputAllowAll, m_dataOutputAllowedSet, m_dataOutputFileName, m_displayCandidates, m_doLogitTransform, m_drDuringAmNonAdaptiveInt, m_drMaxNumExtraStages, m_drScalesForExtraStages, m_filteredChainDataOutputAllowAll, m_filteredChainDataOutputAllowedSet, m_filteredChainDataOutputFileName, m_filteredChainDataOutputFileType, m_filteredChainDiscardedPortion, m_filteredChainGenerate, m_filteredChainLag, m_initialPositionDataInputFileName, m_initialPositionDataInputFileType, m_initialPositionUsePreviousLevelLikelihood, m_initialProposalCovMatrixDataInputFileName, m_initialProposalCovMatrixDataInputFileType, m_initialValuesOfDisabledParameters, m_loadBalanceAlgorithmId, m_loadBalanceTreshold, m_maxEffectiveSizeRatio, m_maxRejectionRate, m_minAcceptableEta, m_minEffectiveSizeRatio, m_minRejectionRate, m_option_algorithm, m_option_am_adaptedMatrices_dataOutputAllowAll, m_option_am_adaptedMatrices_dataOutputAllowedSet, m_option_am_adaptedMatrices_dataOutputFileName, m_option_am_adaptedMatrices_dataOutputFileType, m_option_am_adaptedMatrices_dataOutputPeriod, m_option_am_adaptInterval, m_option_am_epsilon, m_option_am_eta, m_option_am_initialNonAdaptInterval, m_option_am_keepInitialMatrix, m_option_checkpointOutputFileName, m_option_covRejectionRate, m_option_dataOutputAllowAll, m_option_dataOutputAllowedSet, m_option_dataOutputFileName, m_option_displayCandidates, m_option_doLogitTransform, m_option_dr_duringAmNonAdaptiveInt, m_option_dr_listOfScalesForExtraStages, m_option_dr_maxNumExtraStages, m_option_filteredChain_dataOutputAllowAll, m_option_filteredChain_dataOutputAllowedSet, m_option_filteredChain_dataOutputFileName, m_option_filteredChain_dataOutputFileType, m_option_filteredChain_discardedPortion, m_option_filteredChain_generate, m_option_filteredChain_lag, m_option_initialPosition_dataInputFileName, m_option_initialPosition_dataInputFileType, m_option_initialPositionUsePreviousLevelLikelihood, m_option_initialProposalCovMatrix_dataInputFileName, m_option_initialProposalCovMatrix_dataInputFileType, m_option_initialValuesOfDisabledParameters, m_option_listOfDisabledParameters, m_option_loadBalanceAlgorithmId, m_option_loadBalanceTreshold, m_option_maxEffectiveSizeRatio, m_option_maxRejectionRate, m_option_minAcceptableEta, m_option_minEffectiveSizeRatio, m_option_minRejectionRate, m_option_putOutOfBoundsInChain, m_option_rawChain_dataInputFileName, m_option_rawChain_dataInputFileType, m_option_rawChain_dataOutputAllowAll, m_option_rawChain_dataOutputAllowedSet, m_option_rawChain_dataOutputFileName, m_option_rawChain_dataOutputFileType, m_option_rawChain_dataOutputPeriod, m_option_rawChain_displayPeriod, m_option_rawChain_generateExtra, m_option_rawChain_measureRunTimes, m_option_rawChain_size, m_option_scaleCovMatrix, m_option_stopAtEnd, m_option_tk, m_option_tk_useLocalHessian, m_option_tk_useNewtonComponent, m_option_totallyMute, m_parameterDisabledSet, m_prefix, m_putOutOfBoundsInChain, m_rawChainDataInputFileName, m_rawChainDataInputFileType, m_rawChainDataOutputAllowAll, m_rawChainDataOutputAllowedSet, m_rawChainDataOutputFileName, m_rawChainDataOutputFileType, m_rawChainDataOutputPeriod, m_rawChainDisplayPeriod, m_rawChainGenerateExtra, m_rawChainMeasureRunTimes, m_rawChainSize, m_scaleCovMatrix, m_stopAtEnd, m_tk, m_tkUseLocalHessian, m_tkUseNewtonComponent, and m_totallyMute.
Referenced by QUESO::operator<<().
void QUESO::MLSamplingLevelOptions::scanOptionsValues | ( | const MLSamplingLevelOptions * | defaultOptions | ) |
It prints the option values. It scans the option values from the options input file.
Definition at line 585 of file MLSamplingLevelOptions.C.
References copyOptionsValues(), defineAllOptions(), getAllOptions(), m_env, m_parser, m_prefix, QUESO::BaseEnvironment::optionsInputFileName(), queso_deprecated, and QUESO::BoostInputOptionsParser::scanInputFile().
Referenced by QUESO::MLSampling< P_V, P_M >::generateSequence().
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Definition at line 835 of file MLSamplingLevelOptions.C.
std::string QUESO::MLSamplingLevelOptions::m_algorithm |
Which algorithm to use for sampling.
Definition at line 357 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_amAdaptedMatricesDataOutputAllowAll |
Whether or not subEnvs will write to output file for 'am' adapted matrices.
Definition at line 339 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::set<unsigned int> QUESO::MLSamplingLevelOptions::m_amAdaptedMatricesDataOutputAllowedSet |
subEnvs that will write to output file for 'am' adapted matrices.
Definition at line 342 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_amAdaptedMatricesDataOutputFileName |
Name of output file for 'am' adapted matrices.
Definition at line 333 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_amAdaptedMatricesDataOutputFileType |
Type of output file for 'am' adapted matrices.
Definition at line 336 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_amAdaptedMatricesDataOutputPeriod |
Period for outputing 'am' adapted matrices.
Definition at line 330 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_amAdaptInterval |
'am' adaptation interval.
Definition at line 327 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
double QUESO::MLSamplingLevelOptions::m_amEpsilon |
'am' epsilon.
Definition at line 351 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
double QUESO::MLSamplingLevelOptions::m_amEta |
'am' eta.
Definition at line 348 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_amInitialNonAdaptInterval |
'am' initial non adaptation interval
Definition at line 324 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_amKeepInitialMatrix |
Whether or not 'am' will keep initial (given) matrix.
Definition at line 321 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_checkpointOutputFileName |
Name of checkpoint output file.
Definition at line 157 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), and print().
double QUESO::MLSamplingLevelOptions::m_covRejectionRate |
c.o.v. for judging attempted rejection rate at current level.
Definition at line 196 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), getAllOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_dataOutputAllowAll |
subEnvs that will write to generic output file.
Definition at line 166 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::set<unsigned int> QUESO::MLSamplingLevelOptions::m_dataOutputAllowedSet |
subEnvs that will write to generic output file.
Definition at line 169 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), QUESO::MLSampling< P_V, P_M >::generateSequence_Level0_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_dataOutputFileName |
Name of generic output file.
Definition at line 163 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Level0_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_displayCandidates |
Display candidates generated in the core MH algorithm.
Definition at line 299 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_doLogitTransform |
Whether or not a logit transform will be done for bounded domains.
Definition at line 354 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_drDuringAmNonAdaptiveInt |
Whether or not 'dr' is used during 'am' non adaptive interval.
Definition at line 318 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_drMaxNumExtraStages |
'dr' maximum number of extra stages.
Definition at line 311 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::vector<double> QUESO::MLSamplingLevelOptions::m_drScalesForExtraStages |
'dr' list of scales for proposal covariance matrices from 2nd stage on.
Definition at line 314 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
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Definition at line 368 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), env(), getAllOptions(), and scanOptionsValues().
bool QUESO::MLSamplingLevelOptions::m_filteredChainDataOutputAllowAll |
Whether or not subEnvs will write to output file for filtered chain.
Definition at line 286 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::set<unsigned int> QUESO::MLSamplingLevelOptions::m_filteredChainDataOutputAllowedSet |
subEnvs that will write to output file for filtered chain.
Definition at line 289 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_filteredChainDataOutputFileName |
Name of output file for filtered chain.
Definition at line 280 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_filteredChainDataOutputFileType |
Type of output file for filtered chain.
Definition at line 283 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
double QUESO::MLSamplingLevelOptions::m_filteredChainDiscardedPortion |
Initial discarded portion for chain filtering.
Definition at line 274 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_filteredChainGenerate |
Whether or not to generate filtered chain.
Definition at line 271 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Level0_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step10_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_filteredChainLag |
Spacing for chain filtering.
Definition at line 277 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_help |
If non-empty string, print options and values to output file.
Definition at line 152 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), and getAllOptions().
std::string QUESO::MLSamplingLevelOptions::m_initialPositionDataInputFileName |
Name of input file for initial position.
Definition at line 206 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_initialPositionDataInputFileType |
Type of input file for initial position.
Definition at line 209 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_initialPositionUsePreviousLevelLikelihood |
Use previous level likelihood for initial chain position instead of re-computing it from target pdf.
Definition at line 218 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateBalLinkedChains_all(), QUESO::MLSampling< P_V, P_M >::generateUnbLinkedChains_all(), getAllOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_initialProposalCovMatrixDataInputFileName |
Name of input file for initial proposal covariance matrix.
Definition at line 212 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_initialProposalCovMatrixDataInputFileType |
Type of input file for initial proposal covariance matrix.
Definition at line 215 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::vector<double> QUESO::MLSamplingLevelOptions::m_initialValuesOfDisabledParameters |
Definition at line 223 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), QUESO::MLSampling< P_V, P_M >::generateSequence_Level0_all(), getAllOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_loadBalanceAlgorithmId |
Perform load balancing with chosen algorithm (0 = no balancing).
Definition at line 175 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), QUESO::MLSampling< P_V, P_M >::decideOnBalancedChains_all(), defineAllOptions(), getAllOptions(), QUESO::MLSampling< P_V, P_M >::prepareBalLinkedChains_inter0(), and print().
double QUESO::MLSamplingLevelOptions::m_loadBalanceTreshold |
Perform load balancing if load unbalancing ratio > threshold.
Definition at line 178 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), QUESO::MLSampling< P_V, P_M >::decideOnBalancedChains_all(), defineAllOptions(), getAllOptions(), QUESO::MLSampling< P_V, P_M >::justBalance_proc0(), and print().
double QUESO::MLSamplingLevelOptions::m_maxEffectiveSizeRatio |
Maximum allowed effective size ratio wrt previous level.
Definition at line 184 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step03_inter0(), getAllOptions(), and print().
double QUESO::MLSamplingLevelOptions::m_maxRejectionRate |
maximum allowed attempted rejection rate at current level.
Definition at line 193 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), getAllOptions(), and print().
double QUESO::MLSamplingLevelOptions::m_minAcceptableEta |
minimum acceptable eta,
Used in the GPMSA code.
Definition at line 200 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence(), getAllOptions(), and print().
double QUESO::MLSamplingLevelOptions::m_minEffectiveSizeRatio |
Minimum allowed effective size ratio wrt previous level.
Definition at line 181 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step03_inter0(), getAllOptions(), and print().
double QUESO::MLSamplingLevelOptions::m_minRejectionRate |
minimum allowed attempted rejection rate at current level
Definition at line 190 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), getAllOptions(), and print().
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Definition at line 448 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 443 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 444 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 441 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 442 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 440 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 439 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 446 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 445 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 438 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 437 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 378 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 391 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), defineAllOptions(), getAllOptions(), and print().
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Definition at line 382 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 383 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 381 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 430 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 447 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 436 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 435 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 434 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 424 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 425 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 422 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 423 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 420 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 419 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 421 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), defineAllOptions(), getAllOptions(), and print().
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Definition at line 374 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), and getAllOptions().
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Definition at line 394 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 395 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 398 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 396 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 397 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 400 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 399 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 384 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 385 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 387 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), defineAllOptions(), getAllOptions(), and print().
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Definition at line 390 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), defineAllOptions(), getAllOptions(), and print().
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Definition at line 392 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 386 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), defineAllOptions(), getAllOptions(), and print().
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Definition at line 389 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), defineAllOptions(), getAllOptions(), and print().
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Definition at line 431 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 401 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 402 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 413 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 414 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 408 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Option name for MLSamplingLevelOptions::m_rawChainDataOutputFileType. Option name is m_prefix + "ml_rawChain_dataOutputFileType".
Definition at line 411 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 407 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 405 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 404 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 406 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 403 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 388 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 380 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 449 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 432 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 433 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
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Definition at line 393 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), and print().
std::set<unsigned int> QUESO::MLSamplingLevelOptions::m_parameterDisabledSet |
Definition at line 221 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), QUESO::MLSampling< P_V, P_M >::generateSequence(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
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Definition at line 371 of file MLSamplingLevelOptions.h.
Referenced by defineAllOptions(), getAllOptions(), MLSamplingLevelOptions(), QUESO::operator<<(), and scanOptionsValues().
std::string QUESO::MLSamplingLevelOptions::m_prefix |
bool QUESO::MLSamplingLevelOptions::m_putOutOfBoundsInChain |
Put 'out of bound' candidates in chain as well.
Definition at line 302 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_rawChainDataInputFileName |
Name of input file for raw chain.
Definition at line 227 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_rawChainDataInputFileType |
Type of input file for raw chain.
Definition at line 231 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_rawChainDataOutputAllowAll |
Whether or not subEnvs will write to output file for raw chain.
Definition at line 258 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::set<unsigned int> QUESO::MLSamplingLevelOptions::m_rawChainDataOutputAllowedSet |
subEnvs that will write to output file for raw chain.
Definition at line 261 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_rawChainDataOutputFileName |
Name of output file for raw chain.
Definition at line 249 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Level0_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_rawChainDataOutputFileType |
Type of output file for raw chain.
See MhOptionsValues::m_rawChainDataOutputFileType
Definition at line 255 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Level0_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step11_inter0(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_rawChainDataOutputPeriod |
Period of message display during raw chain generation.
Definition at line 246 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_rawChainDisplayPeriod |
Period of message display during raw chain generation.
Definition at line 240 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_rawChainGenerateExtra |
Generate extra information about raw chain.
Definition at line 237 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_rawChainMeasureRunTimes |
Whether or not to measure run times.
Definition at line 243 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
unsigned int QUESO::MLSamplingLevelOptions::m_rawChainSize |
Size of raw chain.
Definition at line 234 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateBalLinkedChains_all(), QUESO::MLSampling< P_V, P_M >::generateSequence(), QUESO::MLSampling< P_V, P_M >::generateSequence_Level0_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step01_inter0(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step10_all(), QUESO::MLSampling< P_V, P_M >::generateUnbLinkedChains_all(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_scaleCovMatrix |
Whether or not scale proposal covariance matrix.
Definition at line 187 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), getAllOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_stopAtEnd |
Stop at end of such level.
Definition at line 160 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence(), getAllOptions(), and print().
std::string QUESO::MLSamplingLevelOptions::m_str1 |
subEnvs that will write to generic output file.
Definition at line 172 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), and defineAllOptions().
std::string QUESO::MLSamplingLevelOptions::m_str2 |
Definition at line 222 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), and defineAllOptions().
std::string QUESO::MLSamplingLevelOptions::m_str3 |
Definition at line 224 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), and defineAllOptions().
std::string QUESO::MLSamplingLevelOptions::m_str4 |
Definition at line 263 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), and defineAllOptions().
std::string QUESO::MLSamplingLevelOptions::m_str5 |
Definition at line 290 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), and defineAllOptions().
std::string QUESO::MLSamplingLevelOptions::m_str6 |
Definition at line 315 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), and defineAllOptions().
std::string QUESO::MLSamplingLevelOptions::m_str7 |
Definition at line 345 of file MLSamplingLevelOptions.h.
Referenced by checkOptions(), copyOptionsValues(), and defineAllOptions().
std::string QUESO::MLSamplingLevelOptions::m_tk |
Which transition kernel to use for sampling.
Definition at line 360 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_tkUseLocalHessian |
Whether or not 'proposal' uses local Hessian.
Definition at line 305 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_tkUseNewtonComponent |
Whether or not 'proposal' uses Newton component.
Definition at line 308 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().
bool QUESO::MLSamplingLevelOptions::m_totallyMute |
Whether or not to be totally mute (no printout message).
Definition at line 203 of file MLSamplingLevelOptions.h.
Referenced by copyOptionsValues(), defineAllOptions(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step09_all(), QUESO::MLSampling< P_V, P_M >::generateSequence_Step10_all(), getAllOptions(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and print().