QUESO::MhOptionsValues Class Reference

This class provides options for the Metropolis-Hastings generator of samples if no input file is available. More...

#include <MetropolisHastingsSGOptions.h>

Public Member Functions
Constructor/Destructor methods
	MhOptionsValues ()
	Default constructor. More...
	MhOptionsValues (const MhOptionsValues &src)
	Copy constructor. More...
	~MhOptionsValues ()
	Destructor. More...
Set methods
MhOptionsValues &	operator= (const MhOptionsValues &rhs)
	Assignment operator; it copies rhs to this. More...

Public Attributes
std::string	m_dataOutputFileName
bool	m_dataOutputAllowAll
std::set< unsigned int >	m_dataOutputAllowedSet
bool	m_totallyMute
std::string	m_initialPositionDataInputFileName
std::string	m_initialPositionDataInputFileType
std::string	m_initialProposalCovMatrixDataInputFileName
std::string	m_initialProposalCovMatrixDataInputFileType
std::set< unsigned int >	m_parameterDisabledSet
std::string	m_rawChainDataInputFileName
std::string	m_rawChainDataInputFileType
unsigned int	m_rawChainSize
bool	m_rawChainGenerateExtra
unsigned int	m_rawChainDisplayPeriod
bool	m_rawChainMeasureRunTimes
unsigned int	m_rawChainDataOutputPeriod
std::string	m_rawChainDataOutputFileName
std::string	m_rawChainDataOutputFileType
bool	m_rawChainDataOutputAllowAll
std::set< unsigned int >	m_rawChainDataOutputAllowedSet
bool	m_filteredChainGenerate
double	m_filteredChainDiscardedPortion
unsigned int	m_filteredChainLag
std::string	m_filteredChainDataOutputFileName
std::string	m_filteredChainDataOutputFileType
bool	m_filteredChainDataOutputAllowAll
std::set< unsigned int >	m_filteredChainDataOutputAllowedSet
bool	m_displayCandidates
bool	m_putOutOfBoundsInChain
bool	m_tkUseLocalHessian
bool	m_tkUseNewtonComponent
unsigned int	m_drMaxNumExtraStages
std::vector< double >	m_drScalesForExtraStages
bool	m_drDuringAmNonAdaptiveInt
bool	m_amKeepInitialMatrix
unsigned int	m_amInitialNonAdaptInterval
unsigned int	m_amAdaptInterval
unsigned int	m_amAdaptedMatricesDataOutputPeriod
std::string	m_amAdaptedMatricesDataOutputFileName
std::string	m_amAdaptedMatricesDataOutputFileType
bool	m_amAdaptedMatricesDataOutputAllowAll
std::set< unsigned int >	m_amAdaptedMatricesDataOutputAllowedSet
double	m_amEta
	Proposal covariance scaling factor, usually 2.4 * 2.4 / d. More...
double	m_amEpsilon
	Regularisation parameter for the DRAM covariance matrix. More...
unsigned int	m_enableBrooksGelmanConvMonitor
unsigned int	m_BrooksGelmanLag
bool	m_outputLogLikelihood
	Flag for deciding whether or not to dump log likelihood values in output. More...
bool	m_outputLogTarget
	Flag for deciding whether or not to dump log target values in output. More...
bool	m_doLogitTransform
	Flag for deciding whether or not to do logit transform of bounded domains. More...

Private Member Functions
void	copy (const MhOptionsValues &src)
	Copies the option values from src to this. More...

Detailed Description

This class provides options for the Metropolis-Hastings generator of samples if no input file is available.

Metropolis-Hastings generator of samples expects some options for its methods to be fully defined. This class provides default values for such options if no input file is available.

Definition at line 110 of file MetropolisHastingsSGOptions.h.

Constructor & Destructor Documentation

QUESO::MhOptionsValues::MhOptionsValues

(

)

Default constructor.

Assigns the default suite of options to the Metropolis-Hastings generator of samples.

Definition at line 35 of file MetropolisHastingsSGOptions.C.

  :
  m_dataOutputFileName                       (UQ_MH_SG_DATA_OUTPUT_FILE_NAME_ODV),
  m_dataOutputAllowAll                       (UQ_MH_SG_DATA_OUTPUT_ALLOW_ALL_ODV),
//m_dataOutputAllowedSet                     (),
  m_totallyMute                              (UQ_MH_SG_TOTALLY_MUTE_ODV),
  m_initialPositionDataInputFileName         (UQ_MH_SG_INITIAL_POSITION_DATA_INPUT_FILE_NAME_ODV),
  m_initialPositionDataInputFileType         (UQ_MH_SG_INITIAL_POSITION_DATA_INPUT_FILE_TYPE_ODV),
  m_initialProposalCovMatrixDataInputFileName(UQ_MH_SG_INITIAL_PROPOSAL_COV_MATRIX_DATA_INPUT_FILE_NAME_ODV),
  m_initialProposalCovMatrixDataInputFileType(UQ_MH_SG_INITIAL_PROPOSAL_COV_MATRIX_DATA_INPUT_FILE_TYPE_ODV),
//m_parameterDisabledSet                     (),
  m_rawChainDataInputFileName                (UQ_MH_SG_RAW_CHAIN_DATA_INPUT_FILE_NAME_ODV),
  m_rawChainDataInputFileType                (UQ_MH_SG_RAW_CHAIN_DATA_INPUT_FILE_TYPE_ODV),
  m_rawChainSize                             (UQ_MH_SG_RAW_CHAIN_SIZE_ODV),
  m_rawChainGenerateExtra                    (UQ_MH_SG_RAW_CHAIN_GENERATE_EXTRA_ODV),
  m_rawChainDisplayPeriod                    (UQ_MH_SG_RAW_CHAIN_DISPLAY_PERIOD_ODV),
  m_rawChainMeasureRunTimes                  (UQ_MH_SG_RAW_CHAIN_MEASURE_RUN_TIMES_ODV),
  m_rawChainDataOutputPeriod                 (UQ_MH_SG_RAW_CHAIN_DATA_OUTPUT_PERIOD_ODV),
  m_rawChainDataOutputFileName               (UQ_MH_SG_RAW_CHAIN_DATA_OUTPUT_FILE_NAME_ODV),
  m_rawChainDataOutputFileType               (UQ_MH_SG_RAW_CHAIN_DATA_OUTPUT_FILE_TYPE_ODV),
  m_rawChainDataOutputAllowAll               (UQ_MH_SG_RAW_CHAIN_DATA_OUTPUT_ALLOW_ALL_ODV),
//m_rawChainDataOutputAllowedSet             (),
#ifdef QUESO_USES_SEQUENCE_STATISTICAL_OPTIONS
  m_rawChainComputeStats                     (UQ_MH_SG_RAW_CHAIN_COMPUTE_STATS_ODV),
#endif
  m_filteredChainGenerate                    (UQ_MH_SG_FILTERED_CHAIN_GENERATE_ODV),
  m_filteredChainDiscardedPortion            (UQ_MH_SG_FILTERED_CHAIN_DISCARDED_PORTION_ODV),
  m_filteredChainLag                         (UQ_MH_SG_FILTERED_CHAIN_LAG_ODV),
  m_filteredChainDataOutputFileName          (UQ_MH_SG_FILTERED_CHAIN_DATA_OUTPUT_FILE_NAME_ODV),
  m_filteredChainDataOutputFileType          (UQ_MH_SG_FILTERED_CHAIN_DATA_OUTPUT_FILE_TYPE_ODV),
  m_filteredChainDataOutputAllowAll          (UQ_MH_SG_FILTERED_CHAIN_DATA_OUTPUT_ALLOW_ALL_ODV),
//m_filteredChainDataOutputAllowedSet        (),
#ifdef QUESO_USES_SEQUENCE_STATISTICAL_OPTIONS
  m_filteredChainComputeStats                (UQ_MH_SG_FILTERED_CHAIN_COMPUTE_STATS_ODV),
#endif
  m_displayCandidates                        (UQ_MH_SG_DISPLAY_CANDIDATES_ODV),
  m_putOutOfBoundsInChain                    (UQ_MH_SG_PUT_OUT_OF_BOUNDS_IN_CHAIN_ODV),
  m_tkUseLocalHessian                        (UQ_MH_SG_TK_USE_LOCAL_HESSIAN_ODV),
  m_tkUseNewtonComponent                     (UQ_MH_SG_TK_USE_NEWTON_COMPONENT_ODV),
  m_drMaxNumExtraStages                      (UQ_MH_SG_DR_MAX_NUM_EXTRA_STAGES_ODV),
  m_drScalesForExtraStages                   (0),
  m_drDuringAmNonAdaptiveInt                 (UQ_MH_SG_DR_DURING_AM_NON_ADAPTIVE_INT_ODV),
  m_amKeepInitialMatrix                      (UQ_MH_SG_AM_KEEP_INITIAL_MATRIX_ODV),
  m_amInitialNonAdaptInterval                (UQ_MH_SG_AM_INIT_NON_ADAPT_INT_ODV),
  m_amAdaptInterval                          (UQ_MH_SG_AM_ADAPT_INTERVAL_ODV),
  m_amAdaptedMatricesDataOutputPeriod        (UQ_MH_SG_AM_ADAPTED_MATRICES_DATA_OUTPUT_PERIOD_ODV),
  m_amAdaptedMatricesDataOutputFileName      (UQ_MH_SG_AM_ADAPTED_MATRICES_DATA_OUTPUT_FILE_NAME_ODV),
  m_amAdaptedMatricesDataOutputFileType      (UQ_MH_SG_AM_ADAPTED_MATRICES_DATA_OUTPUT_FILE_TYPE_ODV),
  m_amAdaptedMatricesDataOutputAllowAll      (UQ_MH_SG_AM_ADAPTED_MATRICES_DATA_OUTPUT_ALLOW_ALL_ODV),
//m_amAdaptedMatricesDataOutputAllowedSet    (),
  m_amEta                                    (UQ_MH_SG_AM_ETA_ODV),
  m_amEpsilon                                (UQ_MH_SG_AM_EPSILON_ODV),
  m_enableBrooksGelmanConvMonitor            (UQ_MH_SG_ENABLE_BROOKS_GELMAN_CONV_MONITOR),
  m_BrooksGelmanLag                          (UQ_MH_SG_BROOKS_GELMAN_LAG),
  m_outputLogLikelihood                      (UQ_MH_SG_OUTPUT_LOG_LIKELIHOOD),
  m_outputLogTarget                          (UQ_MH_SG_OUTPUT_LOG_TARGET),
  m_doLogitTransform                         (UQ_MH_SG_DO_LOGIT_TRANSFORM)
#ifdef QUESO_USES_SEQUENCE_STATISTICAL_OPTIONS
  ,
  m_alternativeRawSsOptionsValues            (),
  m_alternativeFilteredSsOptionsValues       ()
#endif
{
#ifdef QUESO_USES_SEQUENCE_STATISTICAL_OPTIONS
  if (alternativeRawSsOptionsValues     ) m_alternativeRawSsOptionsValues      = *alternativeRawSsOptionsValues;
  if (alternativeFilteredSsOptionsValues) m_alternativeFilteredSsOptionsValues = *alternativeFilteredSsOptionsValues;
#endif
}

QUESO::MhOptionsValues::MhOptionsValues

(

const MhOptionsValues &

src

)

Copy constructor.

It assigns the same options values from src to this.

Definition at line 109 of file MetropolisHastingsSGOptions.C.

References copy().

{
  this->copy(src);
}

QUESO::MhOptionsValues::~MhOptionsValues

(

)

Destructor.

Definition at line 114 of file MetropolisHastingsSGOptions.C.

{
}

Member Function Documentation

void QUESO::MhOptionsValues::copy ( const MhOptionsValues &  src )

private

Copies the option values from src to this.

Definition at line 126 of file MetropolisHastingsSGOptions.C.

References m_amAdaptedMatricesDataOutputAllowAll, m_amAdaptedMatricesDataOutputAllowedSet, m_amAdaptedMatricesDataOutputFileName, m_amAdaptedMatricesDataOutputFileType, m_amAdaptedMatricesDataOutputPeriod, m_amAdaptInterval, m_amEpsilon, m_amEta, m_amInitialNonAdaptInterval, m_amKeepInitialMatrix, m_BrooksGelmanLag, m_dataOutputAllowAll, m_dataOutputAllowedSet, m_dataOutputFileName, m_displayCandidates, m_doLogitTransform, m_drDuringAmNonAdaptiveInt, m_drMaxNumExtraStages, m_drScalesForExtraStages, m_enableBrooksGelmanConvMonitor, m_filteredChainDataOutputAllowAll, m_filteredChainDataOutputAllowedSet, m_filteredChainDataOutputFileName, m_filteredChainDataOutputFileType, m_filteredChainDiscardedPortion, m_filteredChainGenerate, m_filteredChainLag, m_initialPositionDataInputFileName, m_initialPositionDataInputFileType, m_initialProposalCovMatrixDataInputFileName, m_initialProposalCovMatrixDataInputFileType, m_outputLogLikelihood, m_outputLogTarget, m_parameterDisabledSet, m_putOutOfBoundsInChain, m_rawChainDataInputFileName, m_rawChainDataInputFileType, m_rawChainDataOutputAllowAll, m_rawChainDataOutputAllowedSet, m_rawChainDataOutputFileName, m_rawChainDataOutputFileType, m_rawChainDataOutputPeriod, m_rawChainDisplayPeriod, m_rawChainGenerateExtra, m_rawChainMeasureRunTimes, m_rawChainSize, m_tkUseLocalHessian, m_tkUseNewtonComponent, and m_totallyMute.

Referenced by MhOptionsValues(), and operator=().

{
  m_dataOutputFileName                        = src.m_dataOutputFileName;
  m_dataOutputAllowAll                        = src.m_dataOutputAllowAll;
  m_dataOutputAllowedSet                      = src.m_dataOutputAllowedSet;
  m_totallyMute                               = src.m_totallyMute;
  m_initialPositionDataInputFileName          = src.m_initialPositionDataInputFileName;
  m_initialPositionDataInputFileType          = src.m_initialPositionDataInputFileType;
  m_initialProposalCovMatrixDataInputFileName = src.m_initialProposalCovMatrixDataInputFileName;
  m_initialProposalCovMatrixDataInputFileType = src.m_initialProposalCovMatrixDataInputFileType;
  m_parameterDisabledSet                      = src.m_parameterDisabledSet;
  m_rawChainDataInputFileName                 = src.m_rawChainDataInputFileName;
  m_rawChainDataInputFileType                 = src.m_rawChainDataInputFileType;
  m_rawChainSize                              = src.m_rawChainSize;
  m_rawChainGenerateExtra                     = src.m_rawChainGenerateExtra;
  m_rawChainDisplayPeriod                     = src.m_rawChainDisplayPeriod;
  m_rawChainMeasureRunTimes                   = src.m_rawChainMeasureRunTimes;
  m_rawChainDataOutputPeriod                  = src.m_rawChainDataOutputPeriod;
  m_rawChainDataOutputFileName                = src.m_rawChainDataOutputFileName;
  m_rawChainDataOutputFileType                = src.m_rawChainDataOutputFileType;
  m_rawChainDataOutputAllowAll                = src.m_rawChainDataOutputAllowAll;
  m_rawChainDataOutputAllowedSet              = src.m_rawChainDataOutputAllowedSet;
#ifdef QUESO_USES_SEQUENCE_STATISTICAL_OPTIONS
  m_rawChainComputeStats                      = src.m_rawChainComputeStats;
#endif
//m_rawChainStatisticalOptionsObj             = src.m_rawChainStatisticalOptionsObj; // dakota
//m_rawChainStatOptsInstantiated              = src.m_rawChainStatOptsInstantiated; // dakota
  m_filteredChainGenerate                     = src.m_filteredChainGenerate;
  m_filteredChainDiscardedPortion             = src.m_filteredChainDiscardedPortion;
  m_filteredChainLag                          = src.m_filteredChainLag;
  m_filteredChainDataOutputFileName           = src.m_filteredChainDataOutputFileName;
  m_filteredChainDataOutputFileType           = src.m_filteredChainDataOutputFileType;
  m_filteredChainDataOutputAllowAll           = src.m_filteredChainDataOutputAllowAll;
  m_filteredChainDataOutputAllowedSet         = src.m_filteredChainDataOutputAllowedSet;
#ifdef QUESO_USES_SEQUENCE_STATISTICAL_OPTIONS
  m_filteredChainComputeStats                 = src.m_filteredChainComputeStats;
#endif
//m_filteredChainStatisticalOptionsObj        = src.m_filteredChainStatisticalOptionsObj; // dakota
//m_filteredChainStatOptsInstantiated         = src.m_filteredChainStatOptsInstantiated; // dakota
  m_displayCandidates                         = src.m_displayCandidates;
  m_putOutOfBoundsInChain                     = src.m_putOutOfBoundsInChain;
  m_tkUseLocalHessian                         = src.m_tkUseLocalHessian;
  m_tkUseNewtonComponent                      = src.m_tkUseNewtonComponent;
  m_drMaxNumExtraStages                       = src.m_drMaxNumExtraStages;
  m_drScalesForExtraStages                    = src.m_drScalesForExtraStages;
  m_drDuringAmNonAdaptiveInt                  = src.m_drDuringAmNonAdaptiveInt;
  m_amKeepInitialMatrix                       = src.m_amKeepInitialMatrix;
  m_amInitialNonAdaptInterval                 = src.m_amInitialNonAdaptInterval;
  m_amAdaptInterval                           = src.m_amAdaptInterval;
  m_amAdaptedMatricesDataOutputPeriod         = src.m_amAdaptedMatricesDataOutputPeriod;
  m_amAdaptedMatricesDataOutputFileName       = src.m_amAdaptedMatricesDataOutputFileName;
  m_amAdaptedMatricesDataOutputFileType       = src.m_amAdaptedMatricesDataOutputFileType;
  m_amAdaptedMatricesDataOutputAllowAll       = src.m_amAdaptedMatricesDataOutputAllowAll;
  m_amAdaptedMatricesDataOutputAllowedSet     = src.m_amAdaptedMatricesDataOutputAllowedSet;
  m_amEta                                     = src.m_amEta;
  m_amEpsilon                                 = src.m_amEpsilon;
  m_enableBrooksGelmanConvMonitor             = src.m_enableBrooksGelmanConvMonitor;
  m_BrooksGelmanLag                           = src.m_BrooksGelmanLag;
  m_outputLogLikelihood                       = src.m_outputLogLikelihood;
  m_outputLogTarget                           = src.m_outputLogTarget;
  m_doLogitTransform                          = src.m_doLogitTransform;

#ifdef QUESO_USES_SEQUENCE_STATISTICAL_OPTIONS
  m_alternativeRawSsOptionsValues             = src.m_alternativeRawSsOptionsValues;
  m_alternativeFilteredSsOptionsValues        = src.m_alternativeFilteredSsOptionsValues;
#endif
  return;
}

MhOptionsValues & QUESO::MhOptionsValues::operator=

(

const MhOptionsValues &

rhs

)

Assignment operator; it copies rhs to this.

Definition at line 119 of file MetropolisHastingsSGOptions.C.

References copy().

{
  this->copy(rhs);
  return *this;
}

Member Data Documentation

bool QUESO::MhOptionsValues::m_amAdaptedMatricesDataOutputAllowAll

Definition at line 190 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::set<unsigned int> QUESO::MhOptionsValues::m_amAdaptedMatricesDataOutputAllowedSet

Definition at line 191 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_amAdaptedMatricesDataOutputFileName

Definition at line 188 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_amAdaptedMatricesDataOutputFileType

Definition at line 189 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_amAdaptedMatricesDataOutputPeriod

Definition at line 187 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_amAdaptInterval

Definition at line 186 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

double QUESO::MhOptionsValues::m_amEpsilon

Regularisation parameter for the DRAM covariance matrix.

This is a parameter in the DRAM algorithm that regularises the proposal covariance matrix. Details can be found in Haario et al (2006).

The parameter defines how much the diagonal of the proposal covariance matrix is perturbed. Usually this is small, of order 1e-5.

Definition at line 212 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

double QUESO::MhOptionsValues::m_amEta

Proposal covariance scaling factor, usually 2.4 * 2.4 / d.

This is a parameter in the DRAM algorithm and can be found in Haario et al (2006).

The parameter defines how much the proposal covariance matrix is to be scaled by, and should usually be set to 2.4 * 2.4 / d, where d is the dimension of the state space being sampled.

Definition at line 202 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_amInitialNonAdaptInterval

Definition at line 185 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_amKeepInitialMatrix

Definition at line 184 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_BrooksGelmanLag

Definition at line 215 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_dataOutputAllowAll

Definition at line 142 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::set<unsigned int> QUESO::MhOptionsValues::m_dataOutputAllowedSet

Definition at line 143 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_dataOutputFileName

Definition at line 141 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_displayCandidates

Definition at line 177 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_doLogitTransform

Flag for deciding whether or not to do logit transform of bounded domains.

Definition at line 224 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_drDuringAmNonAdaptiveInt

Definition at line 183 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_drMaxNumExtraStages

Definition at line 181 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::vector<double> QUESO::MhOptionsValues::m_drScalesForExtraStages

Definition at line 182 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_enableBrooksGelmanConvMonitor

Definition at line 214 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_filteredChainDataOutputAllowAll

Definition at line 171 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::set<unsigned int> QUESO::MhOptionsValues::m_filteredChainDataOutputAllowedSet

Definition at line 172 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_filteredChainDataOutputFileName

Definition at line 169 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_filteredChainDataOutputFileType

Definition at line 170 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

double QUESO::MhOptionsValues::m_filteredChainDiscardedPortion

Definition at line 167 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_filteredChainGenerate

Definition at line 166 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_filteredChainLag

Definition at line 168 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_initialPositionDataInputFileName

Definition at line 146 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_initialPositionDataInputFileType

Definition at line 147 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_initialProposalCovMatrixDataInputFileName

Definition at line 148 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_initialProposalCovMatrixDataInputFileType

Definition at line 149 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_outputLogLikelihood

Flag for deciding whether or not to dump log likelihood values in output.

Definition at line 218 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_outputLogTarget

Flag for deciding whether or not to dump log target values in output.

Definition at line 221 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::set<unsigned int> QUESO::MhOptionsValues::m_parameterDisabledSet

Definition at line 150 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_putOutOfBoundsInChain

Definition at line 178 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_rawChainDataInputFileName

Definition at line 151 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_rawChainDataInputFileType

Definition at line 152 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_rawChainDataOutputAllowAll

Definition at line 160 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::set<unsigned int> QUESO::MhOptionsValues::m_rawChainDataOutputAllowedSet

Definition at line 161 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_rawChainDataOutputFileName

Definition at line 158 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

std::string QUESO::MhOptionsValues::m_rawChainDataOutputFileType

Definition at line 159 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_rawChainDataOutputPeriod

Definition at line 157 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_rawChainDisplayPeriod

Definition at line 155 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_rawChainGenerateExtra

Definition at line 154 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_rawChainMeasureRunTimes

Definition at line 156 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

unsigned int QUESO::MhOptionsValues::m_rawChainSize

Definition at line 153 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_tkUseLocalHessian

Definition at line 179 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_tkUseNewtonComponent

Definition at line 180 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), and QUESO::MetropolisHastingsSGOptions::print().

bool QUESO::MhOptionsValues::m_totallyMute

Definition at line 145 of file MetropolisHastingsSGOptions.h.

Referenced by copy(), QUESO::MetropolisHastingsSGOptions::getMyOptionValues(), QUESO::MetropolisHastingsSG< P_V, P_M >::MetropolisHastingsSG(), QUESO::MetropolisHastingsSGOptions::MetropolisHastingsSGOptions(), QUESO::MetropolisHastingsSGOptions::print(), and QUESO::MetropolisHastingsSGOptions::scanOptionsValues().

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The documentation for this class was generated from the following files:

• src/stats/inc/MetropolisHastingsSGOptions.h
• src/stats/src/MetropolisHastingsSGOptions.C