SequenceStatisticalOptions Class Reference

A templated class that stores statistical options (optionally read from an input file) More...

#include <SequenceStatisticalOptions.h>

Public Member Functions
unsigned int	meanMonitorPeriod () const
bool	bmmRun () const
const std::vector< unsigned int > &	bmmLengths () const
bool	bmmDisplay () const
bool	bmmWrite () const
bool	fftCompute () const
unsigned int	fftParamId () const
unsigned int	fftSize () const
bool	fftTestInversion () const
bool	fftWrite () const
bool	psdCompute () const
unsigned int	psdNumBlocks () const
double	psdHopSizeRatio () const
unsigned int	psdParamId () const
bool	psdWrite () const
bool	psdAtZeroCompute () const
const std::vector< unsigned int > &	psdAtZeroNumBlocks () const
double	psdAtZeroHopSizeRatio () const
bool	psdAtZeroDisplay () const
bool	psdAtZeroWrite () const
bool	gewekeCompute () const
double	gewekeNaRatio () const
double	gewekeNbRatio () const
bool	gewekeDisplay () const
bool	gewekeWrite () const
bool	meanStaccCompute () const
bool	histCompute () const
unsigned int	histNumInternalBins () const
bool	cdfStaccCompute () const
unsigned int	cdfStaccNumEvalPositions () const
Constructor/Destructor methods
	SequenceStatisticalOptions (const BaseEnvironment &env, const std::string &prefix)
	Constructor: reads options from the input file. More...
	SequenceStatisticalOptions (const BaseEnvironment &env, const std::string &prefix, const SsOptionsValues &alternativeOptionsValues)
	Constructor: with alternative option values. More...
	~SequenceStatisticalOptions ()
	Destructor. More...
Statistical methods
const std::vector< double > &	initialDiscardedPortions () const
	Finds the initially discarded portion of the chain. Access to private attribute m_initialDiscardedPortions. More...
bool	autoCorrComputeViaDef () const
	Compute autocorrelation via definition. Access to private attribute m_autoCorrComputeViaDef. More...
bool	autoCorrComputeViaFft () const
	Compute autocorrelation via FFT. Access to private attribute m_autoCorrComputeViaFft. More...
unsigned int	autoCorrSecondLag () const
	Returns the second lag of the autocorrelation. Access to private attribute m_autoCorrSecondLag. More...
unsigned int	autoCorrLagSpacing () const
	Returns the spacing of the autocorrelation. Access to private attribute m_autoCorrLagSpacing. More...
unsigned int	autoCorrNumLags () const
	Returns the number of lags of the autocorrelation. Access to private attribute m_autoCorrNumLags. More...
bool	autoCorrDisplay () const
	Displays autocorrelation. Access to private attribute m_autoCorrDisplay. More...
bool	autoCorrWrite () const
	Writes autocorrelation. Access to private attribute m_autoCorrWrite. More...
bool	kdeCompute () const
	Computes KDE. Access to private attribute m_kdeCompute. More...
unsigned int	kdeNumEvalPositions () const
	Returns number of evaluation positions for KDE. Access to private attribute m_kdeNumEvalPositions. More...
bool	covMatrixCompute () const
	Finds the covariance matrix. Access to private attribute m_covMatrixCompute. More...
bool	corrMatrixCompute () const
	Finds the correlation matrix. Access to private attribute m_corrMatrixCompute. More...
I/O method
void	print (std::ostream &os) const
	Prints the initial discarded portion of the chain; and, optionally, other attributes of the chain. More...

Public Attributes
Public attribute
SsOptionsValues	m_ov

Private Member Functions
void	defineMyOptions (boost::program_options::options_description &optionsDesc) const
	Defines the options for the chain. More...
void	getMyOptionValues (boost::program_options::options_description &optionsDesc)
	Reads the chain options. More...

Private Attributes
std::string	m_prefix
const BaseEnvironment &	m_env
boost::program_options::options_description *	m_optionsDesc
std::string	m_option_help
std::string	m_option_initialDiscardedPortions
std::string	m_option_autoCorr_computeViaDef
std::string	m_option_autoCorr_computeViaFft
std::string	m_option_autoCorr_secondLag
std::string	m_option_autoCorr_lagSpacing
std::string	m_option_autoCorr_numLags
std::string	m_option_autoCorr_display
std::string	m_option_autoCorr_write
std::string	m_option_kde_compute
std::string	m_option_kde_numEvalPositions
std::string	m_option_covMatrix_compute
std::string	m_option_corrMatrix_compute
std::string	m_option_mean_monitorPeriod
std::string	m_option_bmm_run
std::string	m_option_bmm_lengths
std::string	m_option_bmm_display
std::string	m_option_bmm_write
std::string	m_option_fft_compute
std::string	m_option_fft_paramId
std::string	m_option_fft_size
std::string	m_option_fft_testInversion
std::string	m_option_fft_write
std::string	m_option_psd_compute
std::string	m_option_psd_numBlocks
std::string	m_option_psd_hopSizeRatio
std::string	m_option_psd_paramId
std::string	m_option_psd_write
std::string	m_option_psdAtZero_compute
std::string	m_option_psdAtZero_numBlocks
std::string	m_option_psdAtZero_hopSizeRatio
std::string	m_option_psdAtZero_display
std::string	m_option_psdAtZero_write
std::string	m_option_geweke_compute
std::string	m_option_geweke_naRatio
std::string	m_option_geweke_nbRatio
std::string	m_option_geweke_display
std::string	m_option_geweke_write
std::string	m_option_meanStacc_compute
std::string	m_option_hist_compute
std::string	m_option_hist_numInternalBins
std::string	m_option_cdfStacc_compute
std::string	m_option_cdfStacc_numEvalPositions

Detailed Description

A templated class that stores statistical options (optionally read from an input file)

A templated class that stores statistical options for a sequence of vectors, e.g. a Markov chain, a Monte Carlo input sequence, or a Monte Carlo output sequence.

Definition at line 269 of file SequenceStatisticalOptions.h.

Constructor & Destructor Documentation

SequenceStatisticalOptions::SequenceStatisticalOptions	(	const BaseEnvironment &	env,
		const std::string &	prefix
	)

Constructor: reads options from the input file.

It assigns to the variables the identifying strings (prefixes) for a sequence of data (scalars; vectors) which had been read from an input file.

Parameters

env	The QUESO environment
prefix	Prefix for reading options from input file

Definition at line 606 of file SequenceStatisticalOptions.C.

References defineMyOptions(), getMyOptionValues(), m_env, m_optionsDesc, m_prefix, and QUESO::queso_require_not_equal_to_msg.

  :
  m_ov                              (),
  m_prefix                          ((std::string)(prefix) + "stats_"),
  m_env                             (env),
  m_optionsDesc                     (new boost::program_options::options_description("Chain statistical options")),
  m_option_help                     (m_prefix + "help"                     ),
  m_option_initialDiscardedPortions (m_prefix + "initialDiscardedPortions" ),
#ifdef QUESO_COMPUTES_EXTRA_POST_PROCESSING_STATISTICS
  m_option_mean_monitorPeriod       (m_prefix + "mean_monitorPeriod"       ),
  m_option_bmm_run                  (m_prefix + "bmm_run"                  ),
  m_option_bmm_lengths              (m_prefix + "bmm_lengths"              ),
  m_option_bmm_display              (m_prefix + "bmm_display"              ),
  m_option_bmm_write                (m_prefix + "bmm_write"                ),
  m_option_fft_compute              (m_prefix + "fft_compute"              ),
  m_option_fft_paramId              (m_prefix + "fft_paramId"              ),
  m_option_fft_size                 (m_prefix + "fft_size"                 ),
  m_option_fft_testInversion        (m_prefix + "fft_testInversion"        ),
  m_option_fft_write                (m_prefix + "fft_write"                ),
  m_option_psd_compute              (m_prefix + "psd_compute"              ),
  m_option_psd_numBlocks            (m_prefix + "psd_numBlocks"            ),
  m_option_psd_hopSizeRatio         (m_prefix + "psd_hopSizeRatio"         ),
  m_option_psd_paramId              (m_prefix + "psd_paramId"              ),
  m_option_psd_write                (m_prefix + "psd_write"                ),
  m_option_psdAtZero_compute        (m_prefix + "psdAtZero_compute"        ),
  m_option_psdAtZero_numBlocks      (m_prefix + "psdAtZero_numBlocks"      ),
  m_option_psdAtZero_hopSizeRatio   (m_prefix + "psdAtZero_hopSizeRatio"   ),
  m_option_psdAtZero_display        (m_prefix + "psdAtZero_display"        ),
  m_option_psdAtZero_write          (m_prefix + "psdAtZero_write"          ),
  m_option_geweke_compute           (m_prefix + "geweke_compute"           ),
  m_option_geweke_naRatio           (m_prefix + "geweke_naRatio"           ),
  m_option_geweke_nbRatio           (m_prefix + "geweke_nbRatio"           ),
  m_option_geweke_display           (m_prefix + "geweke_display"           ),
  m_option_geweke_write             (m_prefix + "geweke_write"             ),
  m_option_meanStacc_compute        (m_prefix + "meanStacc_compute"        ),
  m_option_hist_compute             (m_prefix + "hist_compute"             ),
  m_option_hist_numInternalBins     (m_prefix + "hist_numInternalBins"     ),
  m_option_cdfStacc_compute         (m_prefix + "cdfStacc_compute"         ),
  m_option_cdfStacc_numEvalPositions(m_prefix + "cdfStacc_numEvalPositions"),
#endif
  m_option_autoCorr_computeViaDef   (m_prefix + "autoCorr_computeViaDef"   ),
  m_option_autoCorr_computeViaFft   (m_prefix + "autoCorr_computeViaFft"   ),
  m_option_autoCorr_secondLag       (m_prefix + "autoCorr_secondLag"       ),
  m_option_autoCorr_lagSpacing      (m_prefix + "autoCorr_lagSpacing"      ),
  m_option_autoCorr_numLags         (m_prefix + "autoCorr_numLags"         ),
  m_option_autoCorr_display         (m_prefix + "autoCorr_display"         ),
  m_option_autoCorr_write           (m_prefix + "autoCorr_write"           ),
  m_option_kde_compute              (m_prefix + "kde_compute"              ),
  m_option_kde_numEvalPositions     (m_prefix + "kde_numEvalPositions"     ),
  m_option_covMatrix_compute        (m_prefix + "covMatrix_compute"        ),
  m_option_corrMatrix_compute       (m_prefix + "corrMatrix_compute"       )
{
  queso_deprecated();

  if (m_env.subDisplayFile()) {
    *m_env.subDisplayFile() << "Entering SequenceStatisticalOptions::constructor(1)"
                            << ", prefix = " << m_prefix
                            << std::endl;
  }

  queso_require_not_equal_to_msg(m_env.optionsInputFileName(), "", "this constructor is incompatible with the abscense of an options input file");

  defineMyOptions                (*m_optionsDesc);
  m_env.scanInputFileForMyOptions(*m_optionsDesc);
  getMyOptionValues              (*m_optionsDesc);

  if (m_env.subDisplayFile()) {
    *m_env.subDisplayFile() << "After reading values of options with prefix '" << m_prefix
                            << "', state of SequenceStatisticalOptions object is:"
                            << "\n" << *this
                            << std::endl;
  }

  if (m_env.subDisplayFile()) {
    *m_env.subDisplayFile() << "Leaving SequenceStatisticalOptions::constructor(1)"
                            << ", prefix = " << m_prefix
                            << std::endl;
  }
}

SequenceStatisticalOptions::SequenceStatisticalOptions	(	const BaseEnvironment &	env,
		const std::string &	prefix,
		const SsOptionsValues &	alternativeOptionsValues
	)

Constructor: with alternative option values.

In this constructor, the input options are given by alternativeOptionsValues, thus, they are not read from an input file.

Parameters

env	The QUESO environment
prefix	Prefix for reading options from input file

Definition at line 688 of file SequenceStatisticalOptions.C.

References m_env, m_prefix, and QUESO::queso_require_equal_to_msg.

  :
  m_ov                              (alternativeOptionsValues),
  m_prefix                          ((std::string)(prefix) + "stats_"),
  m_env                             (env),
  m_optionsDesc                     (NULL),
  m_option_help                     (m_prefix + "help"                     ),
  m_option_initialDiscardedPortions (m_prefix + "initialDiscardedPortions" ),
#ifdef QUESO_COMPUTES_EXTRA_POST_PROCESSING_STATISTICS
  m_option_mean_monitorPeriod       (m_prefix + "mean_monitorPeriod"       ),
  m_option_bmm_run                  (m_prefix + "bmm_run"                  ),
  m_option_bmm_lengths              (m_prefix + "bmm_lengths"              ),
  m_option_bmm_display              (m_prefix + "bmm_display"              ),
  m_option_bmm_write                (m_prefix + "bmm_write"                ),
  m_option_fft_compute              (m_prefix + "fft_compute"              ),
  m_option_fft_paramId              (m_prefix + "fft_paramId"              ),
  m_option_fft_size                 (m_prefix + "fft_size"                 ),
  m_option_fft_testInversion        (m_prefix + "fft_testInversion"        ),
  m_option_fft_write                (m_prefix + "fft_write"                ),
  m_option_psd_compute              (m_prefix + "psd_compute"              ),
  m_option_psd_numBlocks            (m_prefix + "psd_numBlocks"            ),
  m_option_psd_hopSizeRatio         (m_prefix + "psd_hopSizeRatio"         ),
  m_option_psd_paramId              (m_prefix + "psd_paramId"              ),
  m_option_psd_write                (m_prefix + "psd_write"                ),
  m_option_psdAtZero_compute        (m_prefix + "psdAtZero_compute"        ),
  m_option_psdAtZero_numBlocks      (m_prefix + "psdAtZero_numBlocks"      ),
  m_option_psdAtZero_hopSizeRatio   (m_prefix + "psdAtZero_hopSizeRatio"   ),
  m_option_psdAtZero_display        (m_prefix + "psdAtZero_display"        ),
  m_option_psdAtZero_write          (m_prefix + "psdAtZero_write"          ),
  m_option_geweke_compute           (m_prefix + "geweke_compute"           ),
  m_option_geweke_naRatio           (m_prefix + "geweke_naRatio"           ),
  m_option_geweke_nbRatio           (m_prefix + "geweke_nbRatio"           ),
  m_option_geweke_display           (m_prefix + "geweke_display"           ),
  m_option_geweke_write             (m_prefix + "geweke_write"             ),
  m_option_meanStacc_compute        (m_prefix + "meanStacc_compute"        ),
  m_option_hist_compute             (m_prefix + "hist_compute"             ),
  m_option_hist_numInternalBins     (m_prefix + "hist_numInternalBins"     ),
  m_option_cdfStacc_compute         (m_prefix + "cdfStacc_compute"         ),
  m_option_cdfStacc_numEvalPositions(m_prefix + "cdfStacc_numEvalPositions"),
#endif
  m_option_autoCorr_computeViaDef   (m_prefix + "autoCorr_computeViaDef"   ),
  m_option_autoCorr_computeViaFft   (m_prefix + "autoCorr_computeViaFft"   ),
  m_option_autoCorr_secondLag       (m_prefix + "autoCorr_secondLag"       ),
  m_option_autoCorr_lagSpacing      (m_prefix + "autoCorr_lagSpacing"      ),
  m_option_autoCorr_numLags         (m_prefix + "autoCorr_numLags"         ),
  m_option_autoCorr_display         (m_prefix + "autoCorr_display"         ),
  m_option_autoCorr_write           (m_prefix + "autoCorr_write"           ),
  m_option_kde_compute              (m_prefix + "kde_compute"              ),
  m_option_kde_numEvalPositions     (m_prefix + "kde_numEvalPositions"     ),
  m_option_covMatrix_compute        (m_prefix + "covMatrix_compute"        ),
  m_option_corrMatrix_compute       (m_prefix + "corrMatrix_compute"       )
{
  queso_deprecated();

  if (m_env.subDisplayFile()) {
    *m_env.subDisplayFile() << "Entering SequenceStatisticalOptions::constructor(2)"
                            << ", prefix = " << m_prefix
                            << std::endl;
  }

  queso_require_equal_to_msg(m_env.optionsInputFileName(), "", "this constructor is incompatible with the existence of an options input file");

  if (m_env.subDisplayFile()) {
    *m_env.subDisplayFile() << "After setting values of options with prefix '" << m_prefix
                            << "', state of SequenceStatisticalOptions object is:"
                            << "\n" << *this
                            << std::endl;
  }

  if (m_env.subDisplayFile()) {
    *m_env.subDisplayFile() << "Leaving SequenceStatisticalOptions::constructor(2)"
                            << ", prefix = " << m_prefix
                            << std::endl;
  }
}

SequenceStatisticalOptions::~SequenceStatisticalOptions

(

)

Destructor.

Definition at line 767 of file SequenceStatisticalOptions.C.

References m_optionsDesc.

{
  queso_deprecated();

  if (m_optionsDesc) delete m_optionsDesc;
}

Member Function Documentation

bool SequenceStatisticalOptions::autoCorrComputeViaDef

(

)

const

Compute autocorrelation via definition. Access to private attribute m_autoCorrComputeViaDef.

Definition at line 1307 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrComputeViaDef, and m_ov.

{
  queso_deprecated();

  return m_ov.m_autoCorrComputeViaDef;
}

bool SequenceStatisticalOptions::autoCorrComputeViaFft

(

)

const

Compute autocorrelation via FFT. Access to private attribute m_autoCorrComputeViaFft.

Definition at line 1315 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrComputeViaFft, and m_ov.

{
  queso_deprecated();

  return m_ov.m_autoCorrComputeViaFft;
}

bool SequenceStatisticalOptions::autoCorrDisplay

(

)

const

Displays autocorrelation. Access to private attribute m_autoCorrDisplay.

Definition at line 1347 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrDisplay, and m_ov.

{
  queso_deprecated();

  return m_ov.m_autoCorrDisplay;
}

unsigned int SequenceStatisticalOptions::autoCorrLagSpacing

(

)

const

Returns the spacing of the autocorrelation. Access to private attribute m_autoCorrLagSpacing.

Definition at line 1331 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrLagSpacing, and m_ov.

{
  queso_deprecated();

  return m_ov.m_autoCorrLagSpacing;
}

unsigned int SequenceStatisticalOptions::autoCorrNumLags

(

)

const

Returns the number of lags of the autocorrelation. Access to private attribute m_autoCorrNumLags.

Definition at line 1339 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrNumLags, and m_ov.

{
  queso_deprecated();

  return m_ov.m_autoCorrNumLags;
}

unsigned int SequenceStatisticalOptions::autoCorrSecondLag

(

)

const

Returns the second lag of the autocorrelation. Access to private attribute m_autoCorrSecondLag.

Definition at line 1323 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrSecondLag, and m_ov.

{
  queso_deprecated();

  return m_ov.m_autoCorrSecondLag;
}

bool SequenceStatisticalOptions::autoCorrWrite

(

)

const

Writes autocorrelation. Access to private attribute m_autoCorrWrite.

Definition at line 1355 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrWrite, and m_ov.

{
  queso_deprecated();

  return m_ov.m_autoCorrWrite;
}

bool SequenceStatisticalOptions::bmmDisplay

(

)

const

Definition at line 1091 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_bmmDisplay, and m_ov.

{
  queso_deprecated();

  return m_ov.m_bmmDisplay;
}

const std::vector< unsigned int > & SequenceStatisticalOptions::bmmLengths

(

)

const

Definition at line 1083 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_bmmLengths, and m_ov.

{
  queso_deprecated();

  return m_ov.m_bmmLengths;
}

bool SequenceStatisticalOptions::bmmRun

(

)

const

Definition at line 1075 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_bmmRun, and m_ov.

{
  queso_deprecated();

  return m_ov.m_bmmRun;
}

bool SequenceStatisticalOptions::bmmWrite

(

)

const

Definition at line 1099 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_bmmWrite, and m_ov.

{
  queso_deprecated();

  return m_ov.m_bmmWrite;
}

bool SequenceStatisticalOptions::cdfStaccCompute

(

)

const

Definition at line 1291 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_cdfStaccCompute, and m_ov.

{
  queso_deprecated();

  return m_ov.m_cdfStaccCompute;
}

unsigned int SequenceStatisticalOptions::cdfStaccNumEvalPositions

(

)

const

Definition at line 1299 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_cdfStaccNumEvalPositions, and m_ov.

{
  queso_deprecated();

  return m_ov.m_cdfStaccNumEvalPositions;
}

bool SequenceStatisticalOptions::corrMatrixCompute

(

)

const

Finds the correlation matrix. Access to private attribute m_corrMatrixCompute.

Definition at line 1387 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_corrMatrixCompute, and m_ov.

{
  queso_deprecated();

  return m_ov.m_corrMatrixCompute;
}

bool SequenceStatisticalOptions::covMatrixCompute

(

)

const

Finds the covariance matrix. Access to private attribute m_covMatrixCompute.

Definition at line 1379 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_covMatrixCompute, and m_ov.

{
  queso_deprecated();

  return m_ov.m_covMatrixCompute;
}

void SequenceStatisticalOptions::defineMyOptions ( boost::program_options::options_description &  optionsDesc ) const

private

Defines the options for the chain.

Definition at line 775 of file SequenceStatisticalOptions.C.

References m_option_autoCorr_computeViaDef, m_option_autoCorr_computeViaFft, m_option_autoCorr_display, m_option_autoCorr_lagSpacing, m_option_autoCorr_numLags, m_option_autoCorr_secondLag, m_option_autoCorr_write, m_option_bmm_lengths, m_option_bmm_run, m_option_cdfStacc_compute, m_option_cdfStacc_numEvalPositions, m_option_corrMatrix_compute, m_option_covMatrix_compute, m_option_fft_compute, m_option_fft_paramId, m_option_fft_size, m_option_fft_testInversion, m_option_fft_write, m_option_geweke_compute, m_option_geweke_display, m_option_geweke_naRatio, m_option_geweke_nbRatio, m_option_geweke_write, m_option_help, m_option_hist_compute, m_option_hist_numInternalBins, m_option_initialDiscardedPortions, m_option_kde_compute, m_option_kde_numEvalPositions, m_option_mean_monitorPeriod, m_option_meanStacc_compute, m_option_psd_compute, m_option_psd_hopSizeRatio, m_option_psd_numBlocks, m_option_psd_paramId, m_option_psd_write, m_option_psdAtZero_compute, m_option_psdAtZero_display, m_option_psdAtZero_hopSizeRatio, m_option_psdAtZero_numBlocks, and m_option_psdAtZero_write.

Referenced by SequenceStatisticalOptions().

{
  queso_deprecated();

  optionsDesc.add_options()
    (m_option_help.c_str(),                                                                                                                    "produce help message for chain statistical options"             )
    (m_option_initialDiscardedPortions.c_str(),       boost::program_options::value<std::string >()->default_value(UQ_SEQUENCE_INITIAL_DISCARDED_PORTIONS_ODV      ), "list of initial discarded portions for chain statistics"        )
#ifdef QUESO_COMPUTES_EXTRA_POST_PROCESSING_STATISTICS
    (m_option_mean_monitorPeriod.c_str(),             boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_MEAN_MONITOR_PERIOD_ODV             ), "period for monitoring mean"                                     )
    (m_option_bmm_run.c_str(),                        boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_BMM_RUN_ODV                         ), "compute variance of sample mean with batch means method"        )
    (m_option_bmm_lengths.c_str(),                    boost::program_options::value<std::string >()->default_value(UQ_SEQUENCE_BMM_LENGTHS_ODV                     ), "list of batch lenghts for BMM"                                  )
    (m_option_fft_compute.c_str(),                    boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_FFT_COMPUTE_ODV                     ), "compute fft"                                                    )
    (m_option_fft_paramId.c_str(),                    boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_FFT_PARAM_ID_ODV                    ), "parameter id for fft computations"                              )
    (m_option_fft_size.c_str(),                       boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_FFT_SIZE_ODV                        ), "fft size"                                                       )
    (m_option_fft_testInversion.c_str(),              boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_FFT_TEST_INVERSION_ODV              ), "test fft inversion"                                             )
    (m_option_fft_write.c_str(),                      boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_FFT_WRITE_ODV                       ), "write fft"                                                      )
    (m_option_psd_compute.c_str(),                    boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_PSD_COMPUTE_ODV                     ), "compute psd"                                                    )
    (m_option_psd_numBlocks.c_str(),                  boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_PSD_NUM_BLOCKS_ODV                  ), "number of blocks for computation of psd"                        )
    (m_option_psd_hopSizeRatio.c_str(),               boost::program_options::value<double      >()->default_value(UQ_SEQUENCE_PSD_HOP_SIZE_RATIO_ODV              ), "hop size ratio for psd"                                         )
    (m_option_psd_paramId.c_str(),                    boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_PSD_PARAM_ID_ODV                    ), "parameter id for psd computations"                              )
    (m_option_psd_write.c_str(),                      boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_PSD_WRITE_ODV                       ), "write psd"                                                      )
    (m_option_psdAtZero_compute.c_str(),              boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_PSD_AT_ZERO_COMPUTE_ODV             ), "compute power spectral densities"                               )
    (m_option_psdAtZero_numBlocks.c_str(),            boost::program_options::value<std::string >()->default_value(UQ_SEQUENCE_PSD_AT_ZERO_NUM_BLOCKS_ODV          ), "list of numbers of blocks for computation of psd at zero"       )
    (m_option_psdAtZero_hopSizeRatio.c_str(),         boost::program_options::value<double      >()->default_value(UQ_SEQUENCE_PSD_AT_ZERO_HOP_SIZE_RATIO_ODV      ), "hop size ratio for psd at zero"                                 )
    (m_option_psdAtZero_display.c_str(),              boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_PSD_AT_ZERO_DISPLAY_ODV             ), "display computed psd at frequency zero on screen"               )
    (m_option_psdAtZero_write.c_str(),                boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_PSD_AT_ZERO_WRITE_ODV               ), "write computed psd at frequency zero to the output file"        )
    (m_option_geweke_compute.c_str(),                 boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_GEWEKE_COMPUTE_ODV                  ), "compute Geweke coefficients"                                    )
    (m_option_geweke_naRatio.c_str(),                 boost::program_options::value<double      >()->default_value(UQ_SEQUENCE_GEWEKE_NA_RATIO_ODV                 ), "ratio NA for Geweke"                                            )
    (m_option_geweke_nbRatio.c_str(),                 boost::program_options::value<double      >()->default_value(UQ_SEQUENCE_GEWEKE_NB_RATIO_ODV                 ), "ratio NB for Geweke"                                            )
    (m_option_geweke_display.c_str(),                 boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_GEWEKE_DISPLAY_ODV                  ), "display computed Geweke on screen"                              )
    (m_option_geweke_write.c_str(),                   boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_GEWEKE_WRITE_ODV                    ), "write computed Geweke to the output file"                       )
    (m_option_meanStacc_compute.c_str(),              boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_MEAN_STACC_COMPUTE_ODV              ), "compute statistical accuracy of mean"                           )
    (m_option_hist_compute.c_str(),                   boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_HIST_COMPUTE_ODV                    ), "compute histograms"                                             )
    (m_option_hist_numInternalBins.c_str(),           boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_HIST_NUM_INTERNAL_BINS_ODV          ), "number of internal bins"                                        )
    (m_option_cdfStacc_compute.c_str(),               boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_CDF_STACC_COMPUTE_ODV               ), "compute statisical accuracy of cdf"                             )
    (m_option_cdfStacc_numEvalPositions.c_str(),      boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_CDF_STACC_NUM_EVAL_POSITIONS_ODV    ), "number of evaluations points for statistical accuracy of cdf"   )
#endif
    (m_option_autoCorr_computeViaDef.c_str(),         boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_AUTO_CORR_COMPUTE_VIA_DEF_ODV       ), "compute correlations via definition"                            )
    (m_option_autoCorr_computeViaFft.c_str(),         boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_AUTO_CORR_COMPUTE_VIA_FFT_ODV       ), "compute correlations via fft"                                   )
    (m_option_autoCorr_secondLag.c_str(),             boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_AUTO_CORR_SECOND_LAG_ODV            ), "second lag for computation of autocorrelations"                 )
    (m_option_autoCorr_lagSpacing.c_str(),            boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_AUTO_CORR_LAG_SPACING_ODV           ), "lag spacing for computation of autocorrelations"                )
    (m_option_autoCorr_numLags.c_str(),               boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_AUTO_CORR_NUM_LAGS_ODV              ), "number of lags for computation of autocorrelations"             )
    (m_option_autoCorr_display.c_str(),               boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_AUTO_CORR_DISPLAY_ODV               ), "display computed autocorrelations on the screen"                )
    (m_option_autoCorr_write.c_str(),                 boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_AUTO_CORR_WRITE_ODV                 ), "write computed autocorrelations to the output file"             )
    (m_option_kde_compute.c_str(),                    boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_KDE_COMPUTE_ODV                     ), "compute kernel density estimators"                              )
    (m_option_kde_numEvalPositions.c_str(),           boost::program_options::value<unsigned int>()->default_value(UQ_SEQUENCE_KDE_NUM_EVAL_POSITIONS_ODV          ), "number of evaluation positions"                                 )
    (m_option_covMatrix_compute.c_str(),              boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_COV_MATRIX_COMPUTE_ODV              ), "compute covariance matrix"                                      )
    (m_option_corrMatrix_compute.c_str(),             boost::program_options::value<bool        >()->default_value(UQ_SEQUENCE_CORR_MATRIX_COMPUTE_ODV             ), "compute correlation matrix"                                     )
  ;

  return;
}

bool SequenceStatisticalOptions::fftCompute

(

)

const

Definition at line 1107 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_fftCompute, and m_ov.

{
  queso_deprecated();

  return m_ov.m_fftCompute;
}

unsigned int SequenceStatisticalOptions::fftParamId

(

)

const

Definition at line 1115 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_fftParamId, and m_ov.

{
  queso_deprecated();

  return m_ov.m_fftParamId;
}

unsigned int SequenceStatisticalOptions::fftSize

(

)

const

Definition at line 1123 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_fftSize, and m_ov.

{
  queso_deprecated();

  return m_ov.m_fftSize;
}

bool SequenceStatisticalOptions::fftTestInversion

(

)

const

Definition at line 1131 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_fftTestInversion, and m_ov.

{
  queso_deprecated();

  return m_ov.m_fftTestInversion;
}

bool SequenceStatisticalOptions::fftWrite

(

)

const

Definition at line 1139 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_fftWrite, and m_ov.

{
  queso_deprecated();

  return m_ov.m_fftWrite;
}

void SequenceStatisticalOptions::getMyOptionValues ( boost::program_options::options_description &  optionsDesc )

private

Reads the chain options.

Definition at line 830 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrComputeViaDef, SsOptionsValues::m_autoCorrComputeViaFft, SsOptionsValues::m_autoCorrDisplay, SsOptionsValues::m_autoCorrLagSpacing, SsOptionsValues::m_autoCorrNumLags, SsOptionsValues::m_autoCorrSecondLag, SsOptionsValues::m_autoCorrWrite, SsOptionsValues::m_bmmLengths, SsOptionsValues::m_bmmRun, SsOptionsValues::m_cdfStaccCompute, SsOptionsValues::m_cdfStaccNumEvalPositions, SsOptionsValues::m_corrMatrixCompute, SsOptionsValues::m_covMatrixCompute, m_env, SsOptionsValues::m_fftCompute, SsOptionsValues::m_fftParamId, SsOptionsValues::m_fftSize, SsOptionsValues::m_fftTestInversion, SsOptionsValues::m_fftWrite, SsOptionsValues::m_gewekeCompute, SsOptionsValues::m_gewekeDisplay, SsOptionsValues::m_gewekeNaRatio, SsOptionsValues::m_gewekeNbRatio, SsOptionsValues::m_gewekeWrite, SsOptionsValues::m_histCompute, SsOptionsValues::m_histNumInternalBins, SsOptionsValues::m_initialDiscardedPortions, SsOptionsValues::m_kdeCompute, SsOptionsValues::m_kdeNumEvalPositions, SsOptionsValues::m_meanMonitorPeriod, SsOptionsValues::m_meanStaccCompute, m_option_autoCorr_computeViaDef, m_option_autoCorr_computeViaFft, m_option_autoCorr_display, m_option_autoCorr_lagSpacing, m_option_autoCorr_numLags, m_option_autoCorr_secondLag, m_option_autoCorr_write, m_option_bmm_lengths, m_option_bmm_run, m_option_cdfStacc_compute, m_option_cdfStacc_numEvalPositions, m_option_corrMatrix_compute, m_option_covMatrix_compute, m_option_fft_compute, m_option_fft_paramId, m_option_fft_size, m_option_fft_testInversion, m_option_fft_write, m_option_geweke_compute, m_option_geweke_display, m_option_geweke_naRatio, m_option_geweke_nbRatio, m_option_geweke_write, m_option_help, m_option_hist_compute, m_option_hist_numInternalBins, m_option_initialDiscardedPortions, m_option_kde_compute, m_option_kde_numEvalPositions, m_option_mean_monitorPeriod, m_option_meanStacc_compute, m_option_psd_compute, m_option_psd_hopSizeRatio, m_option_psd_numBlocks, m_option_psd_paramId, m_option_psd_write, m_option_psdAtZero_compute, m_option_psdAtZero_display, m_option_psdAtZero_hopSizeRatio, m_option_psdAtZero_numBlocks, m_option_psdAtZero_write, m_ov, SsOptionsValues::m_psdAtZeroCompute, SsOptionsValues::m_psdAtZeroDisplay, SsOptionsValues::m_psdAtZeroHopSizeRatio, SsOptionsValues::m_psdAtZeroNumBlocks, SsOptionsValues::m_psdAtZeroWrite, SsOptionsValues::m_psdCompute, SsOptionsValues::m_psdHopSizeRatio, SsOptionsValues::m_psdNumBlocks, SsOptionsValues::m_psdParamId, SsOptionsValues::m_psdWrite, and QUESO::MiscReadDoublesFromString().

Referenced by SequenceStatisticalOptions().

{
  queso_deprecated();

  if (m_env.allOptionsMap().count(m_option_help)) {
    if (m_env.subDisplayFile()) {
      *m_env.subDisplayFile() << optionsDesc
                             << std::endl;
    }
  }

  if (m_env.allOptionsMap().count(m_option_initialDiscardedPortions)) {
    m_ov.m_initialDiscardedPortions.clear();
    std::vector<double> tmpPortions(0,0.);
    std::string inputString = m_env.allOptionsMap()[m_option_initialDiscardedPortions].as<std::string>();
    MiscReadDoublesFromString(inputString,tmpPortions);
    //if (m_env.subDisplayFile()) {
    //  *m_env.subDisplayFile() << "In SequenceStatisticalOptions::getMyOptionValues(): percents = ";
    //  for (unsigned int i = 0; i < tmpPortions.size(); ++i) {
    //    *m_env.subDisplayFile() << " " << tmpPortions[i];
    //  }
    //  *m_env.subDisplayFile() << std::endl;
    //}

    if (tmpPortions.size() > 0) {
      m_ov.m_initialDiscardedPortions.resize(tmpPortions.size(),0.);
      for (unsigned int i = 0; i < m_ov.m_initialDiscardedPortions.size(); ++i) {
        m_ov.m_initialDiscardedPortions[i] = tmpPortions[i];
      }
    }
  }

#ifdef QUESO_COMPUTES_EXTRA_POST_PROCESSING_STATISTICS
  if (m_env.allOptionsMap().count(m_option_mean_monitorPeriod)) {
    m_ov.m_meanMonitorPeriod = m_env.allOptionsMap()[m_option_mean_monitorPeriod].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_bmm_run)) {
    m_ov.m_bmmRun = m_env.allOptionsMap()[m_option_bmm_run].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_bmm_lengths)) {
    m_ov.m_bmmLengths.clear();
    std::vector<double> tmpLengths(0,0.);
    std::string inputString = m_env.allOptionsMap()[m_option_bmm_lengths].as<std::string>();
    MiscReadDoublesFromString(inputString,tmpLengths);
    //if (m_env.subDisplayFile()) {
    //  *m_env.subDisplayFile() << "In SequenceStatisticalOptions::getMyOptionValues(): lengths for BMM = ";
    //  for (unsigned int i = 0; i < tmpLengths.size(); ++i) {
    //    *m_env.subDisplayFile() << " " << tmpLengths[i];
    //  }
    //  *m_env.subDisplayFile() << std::endl;
    //}

    if (tmpLengths.size() > 0) {
      m_ov.m_bmmLengths.resize(tmpLengths.size(),0);
      for (unsigned int i = 0; i < m_ov.m_bmmLengths.size(); ++i) {
        m_ov.m_bmmLengths[i] = (unsigned int) tmpLengths[i];
      }
    }
  }

  if (m_env.allOptionsMap().count(m_option_fft_compute)) {
    m_ov.m_fftCompute = m_env.allOptionsMap()[m_option_fft_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_fft_paramId)) {
    m_ov.m_fftParamId = m_env.allOptionsMap()[m_option_fft_paramId].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_fft_size)) {
    m_ov.m_fftSize = m_env.allOptionsMap()[m_option_fft_size].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_fft_testInversion)) {
    m_ov.m_fftTestInversion = m_env.allOptionsMap()[m_option_fft_testInversion].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_fft_write)) {
    m_ov.m_fftWrite = m_env.allOptionsMap()[m_option_fft_write].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_psd_compute)) {
    m_ov.m_psdCompute = m_env.allOptionsMap()[m_option_psd_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_psd_numBlocks)) {
    m_ov.m_psdNumBlocks = m_env.allOptionsMap()[m_option_psd_numBlocks].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_psd_hopSizeRatio)) {
    m_ov.m_psdHopSizeRatio = m_env.allOptionsMap()[m_option_psd_hopSizeRatio].as<double>();
  }

  if (m_env.allOptionsMap().count(m_option_psd_paramId)) {
    m_ov.m_psdParamId = m_env.allOptionsMap()[m_option_psd_paramId].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_psd_write)) {
    m_ov.m_psdWrite = m_env.allOptionsMap()[m_option_psd_write].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_psdAtZero_compute)) {
    m_ov.m_psdAtZeroCompute = m_env.allOptionsMap()[m_option_psdAtZero_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_psdAtZero_numBlocks)) {
    m_ov.m_psdAtZeroNumBlocks.clear();
    std::vector<double> tmpNumBlocks(0,0.);
    std::string inputString = m_env.allOptionsMap()[m_option_psdAtZero_numBlocks].as<std::string>();
    MiscReadDoublesFromString(inputString,tmpNumBlocks);
    //if (m_env.subDisplayFile()) {
    //  *m_env.subDisplayFile() << "In SequenceStatisticalOptions::getMyOptionValues(): numBlocks for psdAtZero = ";
    //  for (unsigned int i = 0; i < tmpNumBlocks.size(); ++i) {
    //    *m_env.subDisplayFile() << " " << numBlocks[i];
    //  }
    //  *m_env.subDisplayFile() << std::endl;
    //}

    if (tmpNumBlocks.size() > 0) {
      m_ov.m_psdAtZeroNumBlocks.resize(tmpNumBlocks.size(),0);
      for (unsigned int i = 0; i < m_ov.m_psdAtZeroNumBlocks.size(); ++i) {
        m_ov.m_psdAtZeroNumBlocks[i] = (unsigned int) tmpNumBlocks[i];
      }
    }
  }

  if (m_env.allOptionsMap().count(m_option_psdAtZero_hopSizeRatio)) {
    m_ov.m_psdAtZeroHopSizeRatio = m_env.allOptionsMap()[m_option_psdAtZero_hopSizeRatio].as<double>();
  }

  if (m_env.allOptionsMap().count(m_option_psdAtZero_display)) {
    m_ov.m_psdAtZeroDisplay = m_env.allOptionsMap()[m_option_psdAtZero_display].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_psdAtZero_write)) {
    m_ov.m_psdAtZeroWrite = m_env.allOptionsMap()[m_option_psdAtZero_write].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_geweke_compute)) {
    m_ov.m_gewekeCompute = m_env.allOptionsMap()[m_option_geweke_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_geweke_naRatio)) {
    m_ov.m_gewekeNaRatio = m_env.allOptionsMap()[m_option_geweke_naRatio].as<double>();
  }

  if (m_env.allOptionsMap().count(m_option_geweke_nbRatio)) {
    m_ov.m_gewekeNbRatio = m_env.allOptionsMap()[m_option_geweke_nbRatio].as<double>();
  }

  if (m_env.allOptionsMap().count(m_option_geweke_display)) {
    m_ov.m_gewekeDisplay = m_env.allOptionsMap()[m_option_geweke_display].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_geweke_write)) {
    m_ov.m_gewekeWrite = m_env.allOptionsMap()[m_option_geweke_write].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_meanStacc_compute)) {
    m_ov.m_meanStaccCompute = m_env.allOptionsMap()[m_option_meanStacc_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_hist_compute)) {
    m_ov.m_histCompute = m_env.allOptionsMap()[m_option_hist_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_hist_numInternalBins)) {
    m_ov.m_histNumInternalBins = m_env.allOptionsMap()[m_option_hist_numInternalBins].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_cdfStacc_compute)) {
    m_ov.m_cdfStaccCompute = m_env.allOptionsMap()[m_option_cdfStacc_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_cdfStacc_numEvalPositions)) {
    m_ov.m_cdfStaccNumEvalPositions = m_env.allOptionsMap()[m_option_cdfStacc_numEvalPositions].as<unsigned int>();
  }
#endif
  if (m_env.allOptionsMap().count(m_option_autoCorr_computeViaDef)) {
    m_ov.m_autoCorrComputeViaDef = m_env.allOptionsMap()[m_option_autoCorr_computeViaDef].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_autoCorr_computeViaFft)) {
    m_ov.m_autoCorrComputeViaFft = m_env.allOptionsMap()[m_option_autoCorr_computeViaFft].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_autoCorr_secondLag)) {
    m_ov.m_autoCorrSecondLag = m_env.allOptionsMap()[m_option_autoCorr_secondLag].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_autoCorr_lagSpacing)) {
    m_ov.m_autoCorrLagSpacing = m_env.allOptionsMap()[m_option_autoCorr_lagSpacing].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_autoCorr_numLags)) {
    m_ov.m_autoCorrNumLags = m_env.allOptionsMap()[m_option_autoCorr_numLags].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_autoCorr_display)) {
    m_ov.m_autoCorrDisplay = m_env.allOptionsMap()[m_option_autoCorr_display].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_autoCorr_write)) {
    m_ov.m_autoCorrWrite = m_env.allOptionsMap()[m_option_autoCorr_write].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_kde_compute)) {
    m_ov.m_kdeCompute = m_env.allOptionsMap()[m_option_kde_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_kde_numEvalPositions)) {
    m_ov.m_kdeNumEvalPositions = m_env.allOptionsMap()[m_option_kde_numEvalPositions].as<unsigned int>();
  }

  if (m_env.allOptionsMap().count(m_option_covMatrix_compute)) {
    m_ov.m_covMatrixCompute = m_env.allOptionsMap()[m_option_covMatrix_compute].as<bool>();
  }

  if (m_env.allOptionsMap().count(m_option_corrMatrix_compute)) {
    m_ov.m_corrMatrixCompute = m_env.allOptionsMap()[m_option_corrMatrix_compute].as<bool>();
  }

  return;
}

bool SequenceStatisticalOptions::gewekeCompute

(

)

const

Definition at line 1227 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_gewekeCompute, and m_ov.

{
  queso_deprecated();

  return m_ov.m_gewekeCompute;
}

bool SequenceStatisticalOptions::gewekeDisplay

(

)

const

Definition at line 1251 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_gewekeDisplay, and m_ov.

{
  queso_deprecated();

  return m_ov.m_gewekeDisplay;
}

double SequenceStatisticalOptions::gewekeNaRatio

(

)

const

Definition at line 1235 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_gewekeNaRatio, and m_ov.

{
  queso_deprecated();

  return m_ov.m_gewekeNaRatio;
}

double SequenceStatisticalOptions::gewekeNbRatio

(

)

const

Definition at line 1243 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_gewekeNbRatio, and m_ov.

{
  queso_deprecated();

  return m_ov.m_gewekeNbRatio;
}

bool SequenceStatisticalOptions::gewekeWrite

(

)

const

Definition at line 1259 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_gewekeWrite, and m_ov.

{
  queso_deprecated();

  return m_ov.m_gewekeWrite;
}

bool SequenceStatisticalOptions::histCompute

(

)

const

Definition at line 1275 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_histCompute, and m_ov.

{
  queso_deprecated();

  return m_ov.m_histCompute;
}

unsigned int SequenceStatisticalOptions::histNumInternalBins

(

)

const

Definition at line 1283 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_histNumInternalBins, and m_ov.

{
  queso_deprecated();

  return m_ov.m_histNumInternalBins;
}

const std::vector< double > & SequenceStatisticalOptions::initialDiscardedPortions

(

)

const

Finds the initially discarded portion of the chain. Access to private attribute m_initialDiscardedPortions.

Definition at line 1058 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_initialDiscardedPortions, and m_ov.

{
  queso_deprecated();

  return m_ov.m_initialDiscardedPortions;
}

bool SequenceStatisticalOptions::kdeCompute

(

)

const

Computes KDE. Access to private attribute m_kdeCompute.

Definition at line 1363 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_kdeCompute, and m_ov.

{
  queso_deprecated();

  return m_ov.m_kdeCompute;
}

unsigned int SequenceStatisticalOptions::kdeNumEvalPositions

(

)

const

Returns number of evaluation positions for KDE. Access to private attribute m_kdeNumEvalPositions.

Definition at line 1371 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_kdeNumEvalPositions, and m_ov.

{
  queso_deprecated();

  return m_ov.m_kdeNumEvalPositions;
}

unsigned int SequenceStatisticalOptions::meanMonitorPeriod

(

)

const

Definition at line 1067 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_meanMonitorPeriod, and m_ov.

{
  queso_deprecated();

  return m_ov.m_meanMonitorPeriod;
}

bool SequenceStatisticalOptions::meanStaccCompute

(

)

const

Definition at line 1267 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_meanStaccCompute, and m_ov.

{
  queso_deprecated();

  return m_ov.m_meanStaccCompute;
}

void SequenceStatisticalOptions::print

(

std::ostream &

os

)

const

Prints the initial discarded portion of the chain; and, optionally, other attributes of the chain.

Definition at line 1395 of file SequenceStatisticalOptions.C.

References SsOptionsValues::m_autoCorrComputeViaDef, SsOptionsValues::m_autoCorrComputeViaFft, SsOptionsValues::m_autoCorrDisplay, SsOptionsValues::m_autoCorrLagSpacing, SsOptionsValues::m_autoCorrNumLags, SsOptionsValues::m_autoCorrSecondLag, SsOptionsValues::m_autoCorrWrite, SsOptionsValues::m_bmmLengths, SsOptionsValues::m_bmmRun, SsOptionsValues::m_cdfStaccCompute, SsOptionsValues::m_cdfStaccNumEvalPositions, SsOptionsValues::m_corrMatrixCompute, SsOptionsValues::m_covMatrixCompute, SsOptionsValues::m_fftCompute, SsOptionsValues::m_fftParamId, SsOptionsValues::m_fftSize, SsOptionsValues::m_fftTestInversion, SsOptionsValues::m_fftWrite, SsOptionsValues::m_gewekeCompute, SsOptionsValues::m_gewekeDisplay, SsOptionsValues::m_gewekeNaRatio, SsOptionsValues::m_gewekeNbRatio, SsOptionsValues::m_gewekeWrite, SsOptionsValues::m_histCompute, SsOptionsValues::m_histNumInternalBins, SsOptionsValues::m_initialDiscardedPortions, SsOptionsValues::m_kdeCompute, SsOptionsValues::m_kdeNumEvalPositions, SsOptionsValues::m_meanMonitorPeriod, SsOptionsValues::m_meanStaccCompute, m_option_autoCorr_computeViaDef, m_option_autoCorr_computeViaFft, m_option_autoCorr_display, m_option_autoCorr_lagSpacing, m_option_autoCorr_numLags, m_option_autoCorr_secondLag, m_option_autoCorr_write, m_option_bmm_lengths, m_option_bmm_run, m_option_cdfStacc_compute, m_option_cdfStacc_numEvalPositions, m_option_corrMatrix_compute, m_option_covMatrix_compute, m_option_fft_compute, m_option_fft_paramId, m_option_fft_size, m_option_fft_testInversion, m_option_fft_write, m_option_geweke_compute, m_option_geweke_display, m_option_geweke_naRatio, m_option_geweke_nbRatio, m_option_geweke_write, m_option_hist_compute, m_option_hist_numInternalBins, m_option_initialDiscardedPortions, m_option_kde_compute, m_option_kde_numEvalPositions, m_option_mean_monitorPeriod, m_option_meanStacc_compute, m_option_psd_compute, m_option_psd_hopSizeRatio, m_option_psd_numBlocks, m_option_psd_paramId, m_option_psd_write, m_option_psdAtZero_compute, m_option_psdAtZero_display, m_option_psdAtZero_hopSizeRatio, m_option_psdAtZero_numBlocks, m_option_psdAtZero_write, m_ov, SsOptionsValues::m_psdAtZeroCompute, SsOptionsValues::m_psdAtZeroDisplay, SsOptionsValues::m_psdAtZeroHopSizeRatio, SsOptionsValues::m_psdAtZeroNumBlocks, SsOptionsValues::m_psdAtZeroWrite, SsOptionsValues::m_psdCompute, SsOptionsValues::m_psdHopSizeRatio, SsOptionsValues::m_psdNumBlocks, SsOptionsValues::m_psdParamId, and SsOptionsValues::m_psdWrite.

Referenced by QUESO::operator<<().

{
  queso_deprecated();

  os << "\n" << m_option_initialDiscardedPortions << " = ";
  for (unsigned int i = 0; i < m_ov.m_initialDiscardedPortions.size(); ++i) {
    os << m_ov.m_initialDiscardedPortions[i] << " ";
  }
  os
#ifdef QUESO_COMPUTES_EXTRA_POST_PROCESSING_STATISTICS
     << "\n" << m_option_mean_monitorPeriod << " = " << m_ov.m_meanMonitorPeriod
     << "\n" << m_option_bmm_run            << " = " << m_ov.m_bmmRun
     << "\n" << m_option_bmm_lengths        << " = ";
  for (unsigned int i = 0; i < m_ov.m_bmmLengths.size(); ++i) {
    os << m_ov.m_bmmLengths[i] << " ";
  }
  os << "\n" << m_option_fft_compute         << " = " << m_ov.m_fftCompute
     << "\n" << m_option_fft_paramId         << " = " << m_ov.m_fftParamId
     << "\n" << m_option_fft_size            << " = " << m_ov.m_fftSize
     << "\n" << m_option_fft_testInversion   << " = " << m_ov.m_fftTestInversion
     << "\n" << m_option_fft_write           << " = " << m_ov.m_fftWrite
     << "\n" << m_option_psd_compute         << " = " << m_ov.m_psdCompute
     << "\n" << m_option_psd_paramId         << " = " << m_ov.m_psdParamId
     << "\n" << m_option_psd_numBlocks       << " = " << m_ov.m_psdNumBlocks
     << "\n" << m_option_psd_hopSizeRatio    << " = " << m_ov.m_psdHopSizeRatio
     << "\n" << m_option_psd_write           << " = " << m_ov.m_psdWrite
     << "\n" << m_option_psdAtZero_compute   << " = " << m_ov.m_psdAtZeroCompute
     << "\n" << m_option_psdAtZero_numBlocks << " = ";
  for (unsigned int i = 0; i < m_ov.m_psdAtZeroNumBlocks.size(); ++i) {
    os << m_ov.m_psdAtZeroNumBlocks[i] << " ";
  }
  os << "\n" << m_option_psdAtZero_hopSizeRatio    << " = " << m_ov.m_psdAtZeroHopSizeRatio
     << "\n" << m_option_psdAtZero_display         << " = " << m_ov.m_psdAtZeroDisplay
     << "\n" << m_option_psdAtZero_write           << " = " << m_ov.m_psdAtZeroWrite
     << "\n" << m_option_geweke_compute            << " = " << m_ov.m_gewekeCompute
     << "\n" << m_option_geweke_naRatio            << " = " << m_ov.m_gewekeNaRatio
     << "\n" << m_option_geweke_nbRatio            << " = " << m_ov.m_gewekeNbRatio
     << "\n" << m_option_geweke_display            << " = " << m_ov.m_gewekeDisplay
     << "\n" << m_option_geweke_write              << " = " << m_ov.m_gewekeWrite
     << "\n" << m_option_meanStacc_compute         << " = " << m_ov.m_meanStaccCompute
     << "\n" << m_option_hist_compute              << " = " << m_ov.m_histCompute
     << "\n" << m_option_hist_numInternalBins      << " = " << m_ov.m_histNumInternalBins
     << "\n" << m_option_cdfStacc_compute          << " = " << m_ov.m_cdfStaccCompute
     << "\n" << m_option_cdfStacc_numEvalPositions << " = " << m_ov.m_cdfStaccNumEvalPositions
#endif
     << "\n" << m_option_autoCorr_computeViaDef    << " = " << m_ov.m_autoCorrComputeViaDef
     << "\n" << m_option_autoCorr_computeViaFft    << " = " << m_ov.m_autoCorrComputeViaFft
     << "\n" << m_option_autoCorr_secondLag        << " = " << m_ov.m_autoCorrSecondLag
     << "\n" << m_option_autoCorr_lagSpacing       << " = " << m_ov.m_autoCorrLagSpacing
     << "\n" << m_option_autoCorr_numLags          << " = " << m_ov.m_autoCorrNumLags
     << "\n" << m_option_autoCorr_display          << " = " << m_ov.m_autoCorrDisplay
     << "\n" << m_option_autoCorr_write            << " = " << m_ov.m_autoCorrWrite
     << "\n" << m_option_kde_compute               << " = " << m_ov.m_kdeCompute
     << "\n" << m_option_kde_numEvalPositions      << " = " << m_ov.m_kdeNumEvalPositions
     << "\n" << m_option_covMatrix_compute         << " = " << m_ov.m_covMatrixCompute
     << "\n" << m_option_corrMatrix_compute        << " = " << m_ov.m_corrMatrixCompute
     << std::endl;

  return;
}

bool SequenceStatisticalOptions::psdAtZeroCompute

(

)

const

Definition at line 1187 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdAtZeroCompute.

{
  queso_deprecated();

  return m_ov.m_psdAtZeroCompute;
}

bool SequenceStatisticalOptions::psdAtZeroDisplay

(

)

const

Definition at line 1211 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdAtZeroDisplay.

{
  queso_deprecated();

  return m_ov.m_psdAtZeroDisplay;
}

double SequenceStatisticalOptions::psdAtZeroHopSizeRatio

(

)

const

Definition at line 1203 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdAtZeroHopSizeRatio.

{
  queso_deprecated();

  return m_ov.m_psdAtZeroHopSizeRatio;
}

const std::vector< unsigned int > & SequenceStatisticalOptions::psdAtZeroNumBlocks

(

)

const

Definition at line 1195 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdAtZeroNumBlocks.

{
  queso_deprecated();

  return m_ov.m_psdAtZeroNumBlocks;
}

bool SequenceStatisticalOptions::psdAtZeroWrite

(

)

const

Definition at line 1219 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdAtZeroWrite.

{
  queso_deprecated();

  return m_ov.m_psdAtZeroWrite;
}

bool SequenceStatisticalOptions::psdCompute

(

)

const

Definition at line 1147 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdCompute.

{
  queso_deprecated();

  return m_ov.m_psdCompute;
}

double SequenceStatisticalOptions::psdHopSizeRatio

(

)

const

Definition at line 1163 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdHopSizeRatio.

{
  queso_deprecated();

  return m_ov.m_psdHopSizeRatio;
}

unsigned int SequenceStatisticalOptions::psdNumBlocks

(

)

const

Definition at line 1155 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdNumBlocks.

{
  queso_deprecated();

  return m_ov.m_psdNumBlocks;
}

unsigned int SequenceStatisticalOptions::psdParamId

(

)

const

Definition at line 1171 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdParamId.

{
  queso_deprecated();

  return m_ov.m_psdParamId;
}

bool SequenceStatisticalOptions::psdWrite

(

)

const

Definition at line 1179 of file SequenceStatisticalOptions.C.

References m_ov, and SsOptionsValues::m_psdWrite.

{
  queso_deprecated();

  return m_ov.m_psdWrite;
}

Member Data Documentation

const BaseEnvironment& SequenceStatisticalOptions::m_env

private

Definition at line 391 of file SequenceStatisticalOptions.h.

Referenced by getMyOptionValues(), and SequenceStatisticalOptions().

std::string SequenceStatisticalOptions::m_option_autoCorr_computeViaDef

private

Definition at line 397 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_autoCorr_computeViaFft

private

Definition at line 398 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_autoCorr_display

private

Definition at line 402 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_autoCorr_lagSpacing

private

Definition at line 400 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_autoCorr_numLags

private

Definition at line 401 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_autoCorr_secondLag

private

Definition at line 399 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_autoCorr_write

private

Definition at line 403 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_bmm_display

private

Definition at line 413 of file SequenceStatisticalOptions.h.

std::string SequenceStatisticalOptions::m_option_bmm_lengths

private

Definition at line 412 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_bmm_run

private

Definition at line 411 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_bmm_write

private

Definition at line 414 of file SequenceStatisticalOptions.h.

std::string SequenceStatisticalOptions::m_option_cdfStacc_compute

private

Definition at line 438 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_cdfStacc_numEvalPositions

private

Definition at line 439 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_corrMatrix_compute

private

Definition at line 407 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_covMatrix_compute

private

Definition at line 406 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_fft_compute

private

Definition at line 415 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_fft_paramId

private

Definition at line 416 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_fft_size

private

Definition at line 417 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_fft_testInversion

private

Definition at line 418 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_fft_write

private

Definition at line 419 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_geweke_compute

private

Definition at line 430 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_geweke_display

private

Definition at line 433 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_geweke_naRatio

private

Definition at line 431 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_geweke_nbRatio

private

Definition at line 432 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_geweke_write

private

Definition at line 434 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_help

private

Definition at line 394 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), and getMyOptionValues().

std::string SequenceStatisticalOptions::m_option_hist_compute

private

Definition at line 436 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_hist_numInternalBins

private

Definition at line 437 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_initialDiscardedPortions

private

Definition at line 395 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_kde_compute

private

Definition at line 404 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_kde_numEvalPositions

private

Definition at line 405 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_mean_monitorPeriod

private

Definition at line 410 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_meanStacc_compute

private

Definition at line 435 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psd_compute

private

Definition at line 420 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psd_hopSizeRatio

private

Definition at line 422 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psd_numBlocks

private

Definition at line 421 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psd_paramId

private

Definition at line 423 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psd_write

private

Definition at line 424 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psdAtZero_compute

private

Definition at line 425 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psdAtZero_display

private

Definition at line 428 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psdAtZero_hopSizeRatio

private

Definition at line 427 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psdAtZero_numBlocks

private

Definition at line 426 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

std::string SequenceStatisticalOptions::m_option_psdAtZero_write

private

Definition at line 429 of file SequenceStatisticalOptions.h.

Referenced by defineMyOptions(), getMyOptionValues(), and print().

boost::program_options::options_description* SequenceStatisticalOptions::m_optionsDesc

private

Definition at line 392 of file SequenceStatisticalOptions.h.

Referenced by SequenceStatisticalOptions(), and ~SequenceStatisticalOptions().

SsOptionsValues SequenceStatisticalOptions::m_ov

Definition at line 338 of file SequenceStatisticalOptions.h.

Referenced by autoCorrComputeViaDef(), autoCorrComputeViaFft(), autoCorrDisplay(), autoCorrLagSpacing(), autoCorrNumLags(), autoCorrSecondLag(), autoCorrWrite(), bmmDisplay(), bmmLengths(), bmmRun(), bmmWrite(), cdfStaccCompute(), cdfStaccNumEvalPositions(), QUESO::BaseVectorSequence< V, M >::computeAutoCorrViaDef(), QUESO::BaseVectorSequence< V, M >::computeAutoCorrViaFFT(), QUESO::BaseVectorSequence< V, M >::computeBMM(), QUESO::BaseVectorSequence< V, M >::computeCovCorrMatrices(), QUESO::BaseVectorSequence< V, M >::computeFFT(), QUESO::BaseVectorSequence< V, M >::computeGeweke(), QUESO::BaseVectorSequence< V, M >::computeHistCdfstaccKde(), QUESO::BaseVectorSequence< V, M >::computeMeanEvolution(), QUESO::BaseVectorSequence< V, M >::computeMeanStacc(), QUESO::BaseVectorSequence< V, M >::computeMeanVars(), QUESO::BaseVectorSequence< V, M >::computePSD(), QUESO::BaseVectorSequence< V, M >::computePSDAtZero(), QUESO::BaseVectorSequence< V, M >::computeStatistics(), corrMatrixCompute(), covMatrixCompute(), fftCompute(), fftParamId(), fftSize(), fftTestInversion(), fftWrite(), getMyOptionValues(), gewekeCompute(), gewekeDisplay(), gewekeNaRatio(), gewekeNbRatio(), gewekeWrite(), histCompute(), histNumInternalBins(), initialDiscardedPortions(), kdeCompute(), kdeNumEvalPositions(), meanMonitorPeriod(), meanStaccCompute(), print(), psdAtZeroCompute(), psdAtZeroDisplay(), psdAtZeroHopSizeRatio(), psdAtZeroNumBlocks(), psdAtZeroWrite(), psdCompute(), psdHopSizeRatio(), psdNumBlocks(), psdParamId(), and psdWrite().

std::string SequenceStatisticalOptions::m_prefix

private

Definition at line 390 of file SequenceStatisticalOptions.h.

Referenced by SequenceStatisticalOptions().

---

The documentation for this class was generated from the following files:

• src/basic/inc/SequenceStatisticalOptions.h
• src/basic/src/SequenceStatisticalOptions.C